GATK workflows
- 134 followers
- Cambridge, MA USA
- https://gatk.broadinstitute.org
- @gatk_dev
Pinned
Repositories
- gatk4-data-processing Public
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
- gatk4-rnaseq-germline-snps-indels Public
Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
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- gatk4-genome-processing-pipeline Public archive
Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the link the ReadMe to obtain the latest version of the workflow.
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- gatk4-exome-analysis-pipeline Public archive
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and Indel discovery in human exome sequencing data.
- gatk4-basic-joint-genotyping Public
Basic joint genotyping with GATK4. NOT Best Practices, only for teaching/demo purposes.
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