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| Changelog | ||
| ========== | ||
|
|
||
| - 1.8: June 22, 2015 | ||
| - Used 'codesign' to sign "Sequence Matrix.app" as this might prevent | ||
| it from being recognized on MacOS X systems. | ||
| - Thanks to Shiyu Phan for this suggestion! | ||
|
|
||
| - 1.7.9 | ||
| - Turned off displaying 'N's in the display, as we don't re-export | ||
| those anyway. | ||
| - Fixed a bug in the Cluster tool reported by Michael Balke: single | ||
| species without conspecific sequences in the dataset were being | ||
| reported as 'Split'. | ||
|
|
||
| - 1.7.8 | ||
| - Added DOI to the citation for Sequence Matrix. | ||
|
|
||
| - 1.7.7-dev4 | ||
| - Naked Nexus now replaces all non-alphanumeric characters with underscores. | ||
|
|
||
| - 1.7.7-dev3 | ||
| - Fixed a minor bug with clustering in which the "% of valid comparisons | ||
| above the threshold" number was always 0%. | ||
| - Fixed a bug in which multiple "Cluster" analyses in the same session | ||
| caused the ProgressDialog to never close, resulting in the program | ||
| getting "stuck" and a forced quit becoming necessary. | ||
|
|
||
| - 1.7.7-dev2 | ||
| - Rewrote SpeciesDetails to remove the old, bug-ridden algorithm. | ||
| The new one will probably actually work. | ||
| - Added discrimination between "Split only", "Lumped/Split" and | ||
| "Lumped" for clusters in Cluster. | ||
|
|
||
| - 1.7.6 (June 6, 2010) | ||
| - Added code to detect overlapping codonsets on input (#19). | ||
| - Fixed a bug relating to TNT files exported into directory (#55). | ||
| # Changelog | ||
|
|
||
| The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), | ||
| and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). | ||
|
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||
| ## [Unreleased] | ||
|
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||
| ## [v1.9]: May 14, 2021 | ||
| - Replaced Ant-based build process with Maven build. | ||
| - Changed minimum Java version from 1.8 to 11. | ||
| - Consolidated all shared code into TaxonDNA.Common. | ||
| - Added memory information in the SequenceMatrix About dialog box. | ||
| - Added Spotless for code style checking. | ||
|
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||
| - [v1.8.2]: April 17, 2020 | ||
| - Updated Java version from 1.5 to 1.8. No Mac application is available for this release, but I'll try to fix that in #70 before the next release. You can run the JAR file on macOS by opening the Terminal and running: | ||
|
|
||
| - [v1.8.1]: April 17, 2020 | ||
|
|
||
| - [v1.8]: June 22, 2015 | ||
| - Used 'codesign' to sign "Sequence Matrix.app" as this might prevent | ||
| it from being recognized on MacOS X systems. | ||
| - Thanks to Shiyu Phan for this suggestion! | ||
|
|
||
| - 1.7.9 | ||
| - Turned off displaying 'N's in the display, as we don't re-export | ||
| those anyway. | ||
| - Fixed a bug in the Cluster tool reported by Michael Balke: single | ||
| species without conspecific sequences in the dataset were being | ||
| reported as 'Split'. | ||
|
|
||
| - 1.7.8 | ||
| - Added DOI to the citation for Sequence Matrix. | ||
|
|
||
| - 1.7.7-dev4 | ||
| - Naked Nexus now replaces all non-alphanumeric characters with underscores. | ||
|
|
||
| - 1.7.7-dev3 | ||
| - Fixed a minor bug with clustering in which the "% of valid comparisons | ||
| above the threshold" number was always 0%. | ||
| - Fixed a bug in which multiple "Cluster" analyses in the same session | ||
| caused the ProgressDialog to never close, resulting in the program | ||
| getting "stuck" and a forced quit becoming necessary. | ||
|
|
||
| - 1.7.7-dev2 | ||
| - Rewrote SpeciesDetails to remove the old, bug-ridden algorithm. | ||
| The new one will probably actually work. | ||
| - Added discrimination between "Split only", "Lumped/Split" and | ||
| "Lumped" for clusters in Cluster. | ||
|
|
||
| - 1.7.6 (June 6, 2010) | ||
| - Added code to detect overlapping codonsets on input (#19). | ||
| - Fixed a bug relating to TNT files exported into directory (#55). | ||
|
|
||
| [Unreleased]: https://github.com/gaurav/taxondna/compare/v1.9...HEAD | ||
| [v1.9]: https://github.com/gaurav/taxondna/compare/v1.8.2...v1.9 | ||
| [v1.8.2]: https://github.com/gaurav/taxondna/compare/v1.8.1...v1.8.2 | ||
| [v1.8.1]: https://github.com/gaurav/taxondna/compare/v1.8...v1.8.1 | ||
| [1.8]: https://github.com/gaurav/taxondna/releases/tag/1.8 |