halo: haplotype processor

GEAR hosts the halo web application at https://gear.embl.de/halo.

Command line tool

The halo command line tool is needed to compute the input file for the halo web application.

git clone --recurse-submodules https://github.com/gear-genomics/halo.git
cd halo/cli
make all
make install

./bin/halo -h

Name		Name	Last commit message	Last commit date
Latest commit History 98 Commits
cli		cli
client		client
.gitmodules		.gitmodules
.travis.yml		.travis.yml
LICENSE		LICENSE
readme.md		readme.md