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@genepi

Institute of Genetic Epidemiology

Medical University of Innsbruck

Pinned

  1. cloudgene cloudgene Public

    A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

    Java 34 19

  2. imputationserver imputationserver Public

    Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

    Java 73 41

  3. nf-gwas nf-gwas Public

    A nextflow pipeline to perform state-of-the-art genome-wide association studies.

    Nextflow 58 20

  4. haplogrep3 haplogrep3 Public

    Free mtDNA Haplogroup Classification Service

    Java 18 1

  5. mtdna-server-2 mtdna-server-2 Public

    mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes

    Nextflow 5

  6. haplocheck haplocheck Public

    Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies

    HTML 16 2

Repositories

Showing 10 of 55 repositories
  • umi-pipeline-nf Public

    Nextflow pipeline to analyze ONT UMI Sequencing data

    genepi/umi-pipeline-nf’s past year of commit activity
    Python 2 MPL-2.0 1 5 0 Updated Jun 18, 2024
  • mtdna-server-2 Public

    mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes

    genepi/mtdna-server-2’s past year of commit activity
    Nextflow 5 MIT 0 1 0 Updated Jun 6, 2024
  • haplogrep3 Public

    Free mtDNA Haplogroup Classification Service

    genepi/haplogrep3’s past year of commit activity
    Java 18 MIT 1 6 0 Updated Jun 6, 2024
  • nf-gwas Public

    A nextflow pipeline to perform state-of-the-art genome-wide association studies.

    genepi/nf-gwas’s past year of commit activity
    Nextflow 58 MIT 20 7 0 Updated May 29, 2024
  • ngs-class Public

    Next Gen Sequencing Course - Medical University of Innsbruck

    genepi/ngs-class’s past year of commit activity
    Nextflow 1 0 0 0 Updated Apr 26, 2024
  • cloudgene Public

    A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.

    genepi/cloudgene’s past year of commit activity
    Java 34 AGPL-3.0 19 19 6 Updated Apr 19, 2024
  • genepi/vntr-calling-nf’s past year of commit activity
    HTML 0 MIT 1 0 0 Updated Apr 2, 2024
  • genomic-utils Public

    Collection of tools to work with genomic datasets

    genepi/genomic-utils’s past year of commit activity
    Java 1 MIT 1 1 0 Updated Mar 28, 2024
  • imputationserver Public

    Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

    genepi/imputationserver’s past year of commit activity
    Java 73 AGPL-3.0 41 43 1 Updated Mar 22, 2024
  • mitoverse Public

    Documentation for the Mitoverse Platform

    genepi/mitoverse’s past year of commit activity
    HTML 1 0 0 0 Updated Mar 20, 2024

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