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efficient, accurate, and scalable IBD segment detection with unphased genotype data

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This repository contains:

  • a working draft of a manuscript describing two variations on an IBD detection algorithm commonly used in genetic genealogy applications; the algorithms aim to offer:
    • increased sensitivity and/or reduced false positive rate
    • more accurate segment endpoint detection (with confidence intervals on endpoint location in the case of the second algorithm)
    • comparable algorithmic simplicity and (low) computational expense, compared to the current standard
  • a crude python implementation of one of the algorithms, which is simple enough that it could be readily tailored to particular implementations, and could make use of general-purpose GPU hardware

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efficient, accurate, and scalable IBD segment detection with unphased genotype data

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