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@gustaveroussy

Gustave Roussy

Gustave Roussy

Popular repositories

  1. sopa sopa Public

    Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells

    Python 84 7

  2. EaCoN EaCoN Public

    Easy Copy Number !

    R 20 14

  3. FG-Lab FG-Lab Public

    R 8 5

  4. CFS CFS Public

    R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)

    R 6 2

  5. MetaPRISM_Public MetaPRISM_Public Public

    Code support all the analyses and figures for the MetaPRISM paper.

    Python 6 1

  6. single-cell single-cell Public

    R 4 4

Repositories

Showing 10 of 52 repositories
  • sopa Public

    Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells

    Python 84 BSD-3-Clause 7 8 (1 issue needs help) 1 Updated Jun 14, 2024
  • long-reads-bulk Public

    Long-read Bulk DNA-seq pipeline

    Shell 0 0 0 0 Updated Jun 14, 2024
  • rna-editing Public

    This pipeline uses SPRINT and RNAEditingIndexer to identify editing event from RNA-seq

    Python 0 GPL-3.0 0 0 0 Updated Jun 13, 2024
  • training_bigr Public

    This repository containing all trainings from bioinformatics platform of Gustave Roussy

    HTML 0 0 0 0 Updated Jun 13, 2024
  • single-cell Public
    R 4 GPL-3.0 4 0 1 Updated Jun 7, 2024
  • prismtoolbox Public

    Toolbox for histopathology image analysis

    Python 1 BSD-3-Clause 0 0 0 Updated May 27, 2024
  • CFS Public

    R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)

    R 6 2 3 0 Updated May 23, 2024
  • DAISY_Public Public

    Public repository supporting the paper of the DAISY study.

    Python 0 2 0 0 Updated Apr 8, 2024
  • MetaPRISM_Public Public

    Code support all the analyses and figures for the MetaPRISM paper.

    Python 6 BSD-3-Clause 1 0 0 Updated Feb 5, 2024
  • IFSBM-bigdata Public

    Repository with the contents for the coding exercices and the lectures of module 11 of ISFBM university diploma.

    HTML 0 3 0 0 Updated Feb 2, 2024
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