Merge pull request #28 from ibecav/v0.6.2

V0.6.2 github release

NEWS.md

@@ -4,6 +4,8 @@
   - Planned enhancements to Plot2WayANOVA
   - Implemented `ggtheme` so user can choose their theme
   - Implemented `ggplot.component` so user can add arbitary ggplot formatting
+  - Corrected doco to fix failing links under devel https://github.com/r-lib/roxygen2/issues/707
+  - Tested against ggplot2 version 3.3.2
 
 * Release 0.6.1 in development April 2020 CRAN release sumitted May 27
   - Builds locally with R 4.0.0 

R/OurConfidence.R

@@ -14,7 +14,7 @@
 #' @return A ggplot2 object
 #' @export
 #' @importFrom stats qnorm rnorm
-#' @seealso \code{\link[stats]{qnorm}}, \code{\link[stats]{rnorm}}, \code{\link[BSDA]{CIsim}}
+#' @seealso \code{stats::qnorm}, \code{stats::rnorm}, \code{BSDA::CIsim}
 #'
 #' @author Chuck Powell
 #'

R/Plot2WayANOVA.R

@@ -18,7 +18,7 @@
 #'    means, confidence intervals, and group sizes.
 #' \item Use \code{\link[stats]{aov}} function to execute an Analysis of
 #'   Variance (ANOVA)
-#' \item Use \code{\link[sjstats]{anova_stats}} to calculate eta squared
+#' \item Use \code{sjstats::anova_stats} to calculate eta squared
 #'   and omega squared values per factor. If the design is unbalanced warn
 #'   the user and use Type II sums of squares
 #' \item Produce a standard ANOVA table with additional columns
@@ -131,7 +131,7 @@
 #'
 #' @author Chuck Powell
 #' @seealso \code{\link[stats]{aov}}, \code{\link[car]{leveneTest}},
-#' \code{\link[sjstats]{anova_stats}}, \code{\link[stats]{replications}},
+#' \code{sjstats::anova_stats}, \code{\link[stats]{replications}},
 #' \code{\link[stats]{shapiro.test}}
 #' @examples
 #'
@@ -144,8 +144,11 @@
 #' )
 #' 
 #' library(ggplot2)
-#' Plot2WayANOVA(mpg ~ am * vs, mtcars, confidence = .99,
+#' Plot2WayANOVA(mpg ~ am * vs, 
+#'   mtcars, 
+#'   confidence = .99,
 #'   ggplot.component = theme(axis.text.x = element_text(size=13, color="darkred")))
+#'   
 #' @importFrom dplyr group_by summarise %>% n select filter
 #' @import ggplot2
 #' @import rlang

cran-comments.md

@@ -5,11 +5,9 @@
 
 ## R CMD check results
 
-
-── R CMD check results ───────────────────────────────── CGPfunctions 0.6.1 ────
-Duration: 2m 4.3s
+── R CMD check results ───────────────────────────────── CGPfunctions 0.6.2 ────
+Duration: 2m 5.5s
 
 0 errors ✓ | 0 warnings ✓ | 0 notes ✓
 
-R CMD check succeeded
-
+R CMD check succeeded

docs/articles/Using-Plot2WayANOVA_files/accessible-code-block-0.0.1/empty-anchor.js

@@ -0,0 +1,15 @@
+// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
+// v0.0.1
+// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
+
+document.addEventListener('DOMContentLoaded', function() {
+  const codeList = document.getElementsByClassName("sourceCode");
+  for (var i = 0; i < codeList.length; i++) {
+    var linkList = codeList[i].getElementsByTagName('a');
+    for (var j = 0; j < linkList.length; j++) {
+      if (linkList[j].innerHTML === "") {
+        linkList[j].setAttribute('aria-hidden', 'true');
+      }
+    }
+  }
+});

docs/articles/Using-Plot2WayANOVA_files/header-attrs-2.3/header-attrs.js

@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});

docs/articles/Using-PlotXTabs2_files/accessible-code-block-0.0.1/empty-anchor.js

@@ -0,0 +1,15 @@
+// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
+// v0.0.1
+// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
+
+document.addEventListener('DOMContentLoaded', function() {
+  const codeList = document.getElementsByClassName("sourceCode");
+  for (var i = 0; i < codeList.length; i++) {
+    var linkList = codeList[i].getElementsByTagName('a');
+    for (var j = 0; j < linkList.length; j++) {
+      if (linkList[j].innerHTML === "") {
+        linkList[j].setAttribute('aria-hidden', 'true');
+      }
+    }
+  }
+});

docs/articles/Using-PlotXTabs2_files/header-attrs-2.3/header-attrs.js

@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});

docs/articles/Using-PlotXTabs_files/accessible-code-block-0.0.1/empty-anchor.js

@@ -0,0 +1,15 @@
+// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
+// v0.0.1
+// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
+
+document.addEventListener('DOMContentLoaded', function() {
+  const codeList = document.getElementsByClassName("sourceCode");
+  for (var i = 0; i < codeList.length; i++) {
+    var linkList = codeList[i].getElementsByTagName('a');
+    for (var j = 0; j < linkList.length; j++) {
+      if (linkList[j].innerHTML === "") {
+        linkList[j].setAttribute('aria-hidden', 'true');
+      }
+    }
+  }
+});

docs/articles/Using-PlotXTabs_files/header-attrs-2.3/header-attrs.js

@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});

docs/articles/Using-chaid_table_files/accessible-code-block-0.0.1/empty-anchor.js

@@ -0,0 +1,15 @@
+// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
+// v0.0.1
+// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
+
+document.addEventListener('DOMContentLoaded', function() {
+  const codeList = document.getElementsByClassName("sourceCode");
+  for (var i = 0; i < codeList.length; i++) {
+    var linkList = codeList[i].getElementsByTagName('a');
+    for (var j = 0; j < linkList.length; j++) {
+      if (linkList[j].innerHTML === "") {
+        linkList[j].setAttribute('aria-hidden', 'true');
+      }
+    }
+  }
+});

docs/articles/Using-chaid_table_files/header-attrs-2.3/header-attrs.js

@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});

docs/articles/Using-newggslopegraph_files/accessible-code-block-0.0.1/empty-anchor.js

@@ -0,0 +1,15 @@
+// Hide empty <a> tag within highlighted CodeBlock for screen reader accessibility (see https://github.com/jgm/pandoc/issues/6352#issuecomment-626106786) -->
+// v0.0.1
+// Written by JooYoung Seo (jooyoung@psu.edu) and Atsushi Yasumoto on June 1st, 2020.
+
+document.addEventListener('DOMContentLoaded', function() {
+  const codeList = document.getElementsByClassName("sourceCode");
+  for (var i = 0; i < codeList.length; i++) {
+    var linkList = codeList[i].getElementsByTagName('a');
+    for (var j = 0; j < linkList.length; j++) {
+      if (linkList[j].innerHTML === "") {
+        linkList[j].setAttribute('aria-hidden', 'true');
+      }
+    }
+  }
+});

docs/articles/Using-newggslopegraph_files/header-attrs-2.3/header-attrs.js

@@ -0,0 +1,12 @@
+// Pandoc 2.9 adds attributes on both header and div. We remove the former (to
+// be compatible with the behavior of Pandoc < 2.8).
+document.addEventListener('DOMContentLoaded', function(e) {
+  var hs = document.querySelectorAll("div.section[class*='level'] > :first-child");
+  var i, h, a;
+  for (i = 0; i < hs.length; i++) {
+    h = hs[i];
+    if (!/^h[1-6]$/i.test(h.tagName)) continue;  // it should be a header h1-h6
+    a = h.attributes;
+    while (a.length > 0) h.removeAttribute(a[0].name);
+  }
+});

docs/pkgdown.yml

@@ -7,7 +7,7 @@ articles:
   Using-PlotXTabs2: Using-PlotXTabs2.html
   Using-chaid_table: Using-chaid_table.html
   Using-newggslopegraph: Using-newggslopegraph.html
-last_built: 2020-06-18T22:09Z
+last_built: 2020-06-19T17:10Z
 urls:
   reference: http://ibecav.github.io/CGPfunctions/reference
   article: http://ibecav.github.io/CGPfunctions/articles