Fixes #922 "Can't open .igv files from pre-signed URLs"

igvteam · Apr 24, 2021 · 8d58cc5 · 8d58cc5
1 parent cef0476
commit 8d58cc5
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/src/main/java/org/broad/igv/data/IGVDatasetParser.java b/src/main/java/org/broad/igv/data/IGVDatasetParser.java
@@ -83,9 +83,8 @@ public IGVDatasetParser(ResourceLocator copyNoFile, Genome genome) {
     }
 
     private void setColumnDefaults() {
-        String tmp = (dataResourceLocator.getPath().endsWith(".txt")
-                ? dataResourceLocator.getPath().substring(0,
-                dataResourceLocator.getPath().length() - 4) : dataResourceLocator.getPath()).toLowerCase();
+
+        String tmp = dataResourceLocator.getTypeString();
 
         if (tmp.endsWith(".igv")) {
             chrColumn = 0;

diff --git a/test/data/batch/issue_922.txt b/test/data/batch/issue_922.txt
@@ -0,0 +1,2 @@
+genome hg19
+load https://s3.amazonaws.com/igv.org.test/data/recombRate.igv.txt?foobar=blah