msn_dbs

Morphometric Similarity Network Code for Deep Brain Stimulation Data

See the original paper here:

Seidlitz et al, Neuron, 2018 https://www.sciencedirect.com/science/article/pii/S0896627317310929?via%3Dihub

To start, check out dbs_analysis_subject_images.m

this is a script that processes 1 subject from start to finish
also quick / fast versions, and group scripts for running as a batch

A few dependencies:

BCT https://sites.google.com/site/bctnet/

L1 precision https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSLNets

pwling https://www.cs.helsinki.fi/u/ahyvarin/code/pwcausal/

fdr_bh https://uk.mathworks.com/matlabcentral/fileexchange/27418-fdr_bh

All comments welcome!

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
Freesurfer_XYZ.m		Freesurfer_XYZ.m
README.md		README.md
dbs_DPM.m		dbs_DPM.m
dbs_analysis_all.m		dbs_analysis_all.m
dbs_analysis_group_Q.m~		dbs_analysis_group_Q.m~
dbs_analysis_group_images.m		dbs_analysis_group_images.m
dbs_analysis_group_rapid.m		dbs_analysis_group_rapid.m
dbs_analysis_subject_F.m		dbs_analysis_subject_F.m
dbs_analysis_subject_Q.m		dbs_analysis_subject_Q.m
dbs_analysis_subject_images.m		dbs_analysis_subject_images.m
dbs_analysis_subject_rapid.m		dbs_analysis_subject_rapid.m
dbs_complexity.m		dbs_complexity.m
dbs_connectome_groupanalysis.m		dbs_connectome_groupanalysis.m
dbs_connectome_groupanalysis.m~		dbs_connectome_groupanalysis.m~
dbs_connectome_indanalysis.m		dbs_connectome_indanalysis.m
dbs_cost_plots.m		dbs_cost_plots.m
dbs_delta_efficiency.m		dbs_delta_efficiency.m
dbs_draw_cHubs.m		dbs_draw_cHubs.m
dbs_draw_edges.m		dbs_draw_edges.m
dbs_draw_group_matrices.m		dbs_draw_group_matrices.m
dbs_draw_iHubs.m		dbs_draw_iHubs.m
dbs_draw_modular_matrix.m		dbs_draw_modular_matrix.m
dbs_draw_modules.m		dbs_draw_modules.m
dbs_draw_network.m		dbs_draw_network.m
dbs_draw_richclub.m		dbs_draw_richclub.m
dbs_draw_threshold_matrices.m		dbs_draw_threshold_matrices.m
dbs_make_SmallWorlds.m		dbs_make_SmallWorlds.m
dbs_make_comp_nets.m		dbs_make_comp_nets.m
dbs_make_hubs.m		dbs_make_hubs.m
dbs_make_hubs_bin.m		dbs_make_hubs_bin.m
dbs_make_measures.m		dbs_make_measures.m
dbs_make_measures_bin.m		dbs_make_measures_bin.m
dbs_make_networks.m		dbs_make_networks.m
dbs_make_smallworld_cost.m		dbs_make_smallworld_cost.m
dbs_make_zscores.m		dbs_make_zscores.m
dbs_matrix_comparison.m		dbs_matrix_comparison.m
dbs_measure_stats.m		dbs_measure_stats.m
dbs_modularity_consensus_fun.m		dbs_modularity_consensus_fun.m
dbs_mutual_information.m		dbs_mutual_information.m
dbs_network_cost.m		dbs_network_cost.m
dbs_normal_nets.m		dbs_normal_nets.m
dbs_permute_glm.m		dbs_permute_glm.m
dbs_proxdist.m		dbs_proxdist.m
dbs_quick_measures.m		dbs_quick_measures.m
dbs_semimetricity.m		dbs_semimetricity.m
dbs_workthrough.mat		dbs_workthrough.mat
draw_dbs_cHubs.m		draw_dbs_cHubs.m
draw_dbs_edges.m		draw_dbs_edges.m
draw_dbs_iHubs.m		draw_dbs_iHubs.m
draw_dbs_modules.m		draw_dbs_modules.m
epilepsy_analysis_all.m		epilepsy_analysis_all.m
epilepsy_analysis_group_images.m		epilepsy_analysis_group_images.m
epilepsy_analysis_subject_images.m		epilepsy_analysis_subject_images.m
importfile.m		importfile.m

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