jonalv

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Member Since: Nov 11, 2008 (about 1 year)

Following 4 githubbers and watching 25 repositories view all →

Public Repositories (13)

- 4
- 3
bioclipse.structuredb

A molecular structure database for Bioclipse 2

Last updated Wed Dec 23 05:44:13 -0800 2009
- 1
- 2
bioclipse.vscreen

A Virtual Screening feature for Bioclipse

Forked from olas/bioclipse.vscreen Wed Nov 25 04:45:48 -0800 2009

Last updated Tue Dec 15 06:41:16 -0800 2009
- 1
- 5
bioclipse.cheminformatics

Bioclipse2 Cheminformatics.

Forked from egonw/bioclipse.cheminformatics Wed Nov 04 05:31:18 -0800 2009

Last updated Fri Dec 11 06:39:30 -0800 2009
- 1
- 5
bioclipse.rdf

Bioclipse2 RDF.

Forked from egonw/bioclipse.rdf Mon Aug 03 07:02:37 -0700 2009

Last updated Mon Nov 30 05:04:13 -0800 2009
- 1
- 4
bioclipse.statistics

Bioclipse2 Statistics.

Forked from olas/bioclipse.statistics Thu Nov 05 07:05:08 -0800 2009

Last updated Tue Nov 03 09:38:02 -0800 2009
- 2
- 2
bioclipse.brunn

Brunn is a laboratory information system for Bioclipse 2.

Last updated Tue Oct 27 08:21:01 -0700 2009
- 1
- 4
cheminfbenchmark

Cheminformatics Benchmark Toolkit

Forked from egonw/cheminfbenchmark Tue Oct 13 01:24:26 -0700 2009

Last updated Tue Oct 13 08:06:11 -0700 2009
- 1
- 5
cdk

The Chemistry Development Kit

Forked from egonw/cdk Thu Sep 03 05:07:40 -0700 2009

Last updated Tue Oct 13 06:17:05 -0700 2009
- 1
- 4
bioclipse.qsar

Bioclipse2 QSAR.

Forked from olas/bioclipse.qsar Mon Aug 03 06:54:38 -0700 2009

Last updated Thu Oct 08 01:46:13 -0700 2009
- 1
- 4
bioclipse.bioinformatics

The Bioinformatics feature of Bioclipse 2

Forked from masak/bioclipse.bioinformatics Tue Jul 21 02:38:49 -0700 2009

Last updated Thu Oct 08 01:46:08 -0700 2009
- 1
- 1
bioclipse.ds

Bioclipe2 Decision Support.

Last updated Thu Oct 08 01:46:06 -0700 2009
- 1
- 2
bioclipse.balloon

Bioclipse2 Balloon Functionality.

Forked from olas/bioclipse.balloon Wed Aug 19 06:48:48 -0700 2009

Last updated Thu Oct 08 01:20:24 -0700 2009
- 1
- 3
bioclipse.data

Bioclipse2 Data: including the Blue Obelisk Structure data set and and older DrugBank version.

Forked from olas/bioclipse.data Tue Jul 21 08:27:20 -0700 2009

Last updated Fri Aug 07 01:35:44 -0700 2009

Public Activity

jonalv deleted branch ImportStatisticsDialog at jonalv/bioclipse.structuredb Wed Dec 23 05:45:18 -0800 2009

Deleted branch was at jonalv/bioclipse.structuredb/tree/ImportStatisticsDialog

jonalv pushed to master at jonalv/bioclipse.structuredb Wed Dec 23 05:44:14 -0800 2009

HEAD is 18e54afceac1a33beb80b42648a5de1e847ccc4b

4 commits »

jonalv pushed to ImportStatisticsDialog at jonalv/bioclipse.structuredb Wed Dec 23 05:44:13 -0800 2009

HEAD is 18e54afceac1a33beb80b42648a5de1e847ccc4b

jonalv committed 18e54afc:

Pop up a dialog after import of molecules

jonalv created branch ImportStatisticsDialog at jonalv/bioclipse.structuredb Thu Dec 17 10:52:27 -0800 2009

New branch is at jonalv/bioclipse.structuredb/tree/ImportStatisticsDialog

jonalv pushed to master at jonalv/bioclipse.structuredb Wed Dec 16 07:08:12 -0800 2009

HEAD is 2faf22e622ce9c65debc059abb567b727c8e8628

jonalv committed 2faf22e6:

Dialog with apply to all when deleting labels

jonalv pushed to master at jonalv/bioclipse.structuredb Wed Dec 16 04:04:16 -0800 2009

HEAD is 577124fa5d3c409e6edf8fe357d52296589e2d12

2 commits »

jonalv pushed to master at jonalv/bioclipse.vscreen Tue Dec 15 06:41:16 -0800 2009

HEAD is e62566996b61678efc60f73f555aa1938474c4b0

2 commits »

jonalv pushed to 2.2.x at jonalv/bioclipse.vscreen Tue Dec 15 06:41:16 -0800 2009

HEAD is d3017a3e45e9ff98f6c2260de648f68e1fa151fa

11 commits »

jonalv committed d3017a3e:

s/TimeCalculater/TimeCalculator
Ola Spjuth committed 8a441432:

Updated tests for new API (using EP).
Ola Spjuth committed 17186483:

Added 5 more filters based on CDK impl.
Ola Spjuth committed 962143c1:

Added ParamFilter and manager methods.
Ola Spjuth committed fca83470:

Moved filters to new package 'impl'.
Ola Spjuth committed 074238cd:

Remove unnecessary save() after annotate.
Ola Spjuth committed 188df49b:

Annotate the new molecule, not the old.
Ola Spjuth committed f961c1ae:

Updated tests for vscreen (now using EP).
Ola Spjuth committed 5de63446:

Rewrite vscreen filters to use extension point.
Ola Spjuth committed 9ad69522:

Updated version to 2.2.0.RC2.
Ola Spjuth committed 8e1641ce:

Updated for API change in StructureDB.

jonalv pushed to master at olas/bioclipse.core Tue Dec 15 06:15:07 -0800 2009

HEAD is 4531d675aa5abbf6a16cbb83cb5dfb3934b06c28

2 commits »

jonalv pushed to master at jonalv/bioclipse.structuredb Tue Dec 15 06:07:46 -0800 2009

HEAD is 4f14e02f13615664c26fdf0b468333048c9ae291

jonalv committed 4f14e02f:

s/TimeCalculater/TimeCalculator

jonalv pushed to master at olas/bioclipse.core Tue Dec 15 06:07:25 -0800 2009

HEAD is 4be84fea9c02261fbb37d0c69a59c92a6ceade55

jonalv committed 4be84fea:

s/TimeCalculater/TimeCalculator/

jonalv pushed to master at olas/bioclipse.core Tue Dec 15 06:04:53 -0800 2009

HEAD is dfbb37ababe7636fb11065b4566c66786d7f21b0

19 commits »

jonalv committed dfbb37ab:

Merge remote branch 'origin/2.2.x'
egonw committed 5be0aff4:

Removed CVS folders
egonw committed a4a0e7a0:

Added org.apache.xml.resolver 1.2.0 from the Eclipse Orbit project
egonw committed 6582d973:

Added org.apache.xml.serializer 2.7.1 from the Eclipse Orbit project
egonw committed 218003c2:

Added javax.xml 1.3.4 from the Eclipse Orbit project
egonw committed e26a8188:

Added javax.xml and javax.activation from the Eclipse Orbit project,
egonw committed c15522f2:

Added Xerces 2.9.0 as bundled by the Eclipse Orbit project
masak committed b02086d7:

[JsConsoleView] also strip proxies from class name
masak committed 66d7989d:

Merge branch '2.2.x' of github.com:olas/bioclipse.core into 2.2.x
masak committed b2808f42:

[JsConsoleView] strip namespace in List descriptions
Ola Spjuth committed 544d3d53:

Made prefs delimiter use conservative characters.
Ola Spjuth committed d24dfd6f:

Added dragassistant for navigator.
Ola Spjuth committed c9ffb2f1:

Updated copyright year to 2009.
Ola Spjuth committed 3e25411b:

Added missing copyright statements.
jonalv committed 6aabc684:

Merge remote branch 'origin/2.2.x' into 2.2.x
jonalv committed bd5c9f9f:

changed from FormLayout to GridLayout.
Ola Spjuth committed 9b765116:

Merge branch '2.2.x' of git@github.com:olas/bioclipse.core into 2.2.x
Ola Spjuth committed 4e63c99e:

Disabled p2 update menus using an Activity.
Ola Spjuth committed 3409b92f:

Removed outcommented code.

jonalv pushed to master at jonalv/bioclipse.structuredb Mon Dec 14 07:14:50 -0800 2009

HEAD is df92448c6f03e6995b9f2ab637d279284ab3d30f

Arvid Berg committed df92448c:

Double-click opens MoleuclesEditor for labels

jonalv pushed to master at jonalv/bioclipse.structuredb Mon Dec 14 06:41:48 -0800 2009

HEAD is 75389895ded806e2e2bae982cdfb350eb5a7d90a

jonalv committed 75389895:

Just show all possible properties

jonalv pushed to master at jonalv/bioclipse.structuredb Fri Dec 11 06:45:00 -0800 2009

HEAD is 3fe29ad26f11edeefc8471055f094958967e79d2

jonalv committed 3fe29ad2:

SQL query for properties names, also table indexes

jonalv pushed to jonalv-lazy-sdfeditor at jonalv/bioclipse.cheminformatics Fri Dec 11 06:39:31 -0800 2009

HEAD is 4d662aec32e699e02ce44be639e35a2511e88290

8 commits »

Arvid Berg committed 4d662aec:

Removed unused field
Arvid Berg committed f2802c5b:

Added update after caching of property
Arvid Berg committed 61b153e0:

Changed indentation and removed trailing spaces
Arvid Berg committed 59b51080:

Reversed if statement.
Arvid Berg committed 60803fad:

Formating changes and removed some logging
Arvid Berg committed 3677a8e6:

Change i to col-1 and added variable for cleaner code.
Arvid Berg committed 749c9305:

Another way to remove the old orders
Arvid Berg committed d66a5ce5:

No need to refresh here

jonalv created branch jonalv-lazy-sdfeditor at jonalv/bioclipse.cheminformatics Thu Dec 10 02:04:43 -0800 2009

New branch is at jonalv/bioclipse.cheminformatics/tree/jonalv-lazy-sdfeditor

jonalv deleted branch jonalv-lazy-sdfeditor at jonalv/bioclipse.cheminformatics Thu Dec 10 02:04:34 -0800 2009

Deleted branch was at jonalv/bioclipse.cheminformatics/tree/jonalv-lazy-sdfeditor

jonalv created branch jonalv-lazy-sdfeditor at jonalv/bioclipse.cheminformatics Thu Dec 10 01:27:57 -0800 2009

New branch is at jonalv/bioclipse.cheminformatics/tree/jonalv-lazy-sdfeditor

jonalv deleted branch jonalv-lazy-sdfeditor at jonalv/bioclipse.cheminformatics Thu Dec 10 01:27:53 -0800 2009

Deleted branch was at jonalv/bioclipse.cheminformatics/tree/jonalv-lazy-sdfeditor

jonalv created branch jonalv-lazy-sdfeditor at jonalv/bioclipse.cheminformatics Wed Dec 09 07:44:05 -0800 2009

New branch is at jonalv/bioclipse.cheminformatics/tree/jonalv-lazy-sdfeditor

jonalv pushed to master at jonalv/bioclipse.structuredb Tue Dec 08 08:34:13 -0800 2009

HEAD is 5956532d5c2197697c1e16fea1fc88e6eb61352d

jonalv committed 5956532d:

use a method call insted to be on the safe side

jonalv pushed to 2.2.x at jonalv/bioclipse.cheminformatics Tue Dec 08 02:29:09 -0800 2009

HEAD is 15817b58a6f8db1d2035dfbd4c05b3986dd62e33

32 commits »

Arvid Berg committed bdba3a04:

Added modules and edits for radical support
egonw committed b15fb9da:

Pushed in a new CDK 1.3.1 plus updated CDK-JChemPaint (tag 1.3.1.0bioclipse2)
Arvid Berg committed 8a1a7151:

Added ability to generate atom number at an offset.
Stefan Kuhn committed e8cc795b:

the RadicalGenerator can render atoms with more than one single electron.
Arvid Berg committed 67311583:

Added modules and edits for radical support
egonw committed 7520af73:

Pushed in a new CDK 1.3.1 plus updated CDK-JChemPaint 1
Arvid Berg committed b6dea2f6:

Scale line width in SWT-renderer
Stefan Kuhn committed 4b02c616:

the RadicalGenerator can render atoms with more than one single electron.
Arvid Berg committed 12c75ea3:

Implements radical support in JCP
Arvid Berg committed 6abb1152:

Added modules and edits for radical support
egonw committed d394608e:

Remove unneeded versioning of imported plugins
Arvid Berg committed 06a344db:

Changed check for active editor if multipage.
Arvid Berg committed 5e50f971:

Changes the symbol of all selected atom through the context menu.
Arvid Berg committed 40715ab4:

Show atom and bond menu if any of the selected items is bond or atom
Arvid Berg committed 7621a137:

Added ability to generate atom number at an offset.
Arvid Berg committed 04ab19e6:

Added check for widget disposed
Arvid Berg committed 092d110f:

Made ring fit to atom/bond when hovered
Arvid Berg committed 5c33ac4a:

Fix for generating a merge ring when two atoms are at the same positions
Arvid Berg committed 474cb5ee:

Make sure not to use NaN when drawing a general path
Stefan Kuhn committed 0c20daa5:

the cleanup no longer collapses fragments

And 12 more commits...

jonalv pushed to master at jonalv/bioclipse.structuredb Mon Dec 07 09:23:55 -0800 2009

HEAD is ffe8d87dc67ba23e3d003f4a6eb29aaa43b9733f

9 commits »

jonalv committed ffe8d87d:

Merge branch 'master', remote branch 'olas/master'
Ola Spjuth committed 8dc4baf5:

Merge branch 'master' of git://github.com/jonalv/bioclipse.structuredb
Ola Spjuth committed 117aabec:

Merge branch 'master' of git://github.com/jonalv/bioclipse.structuredb
Ola Spjuth committed 6c6c9789:

Merge branch 'master' of git://github.com/jonalv/bioclipse.structuredb
Ola Spjuth committed 2e39410e:

Merge branch 'master' of git://github.com/jonalv/bioclipse.structuredb
Ola Spjuth committed 69d8a903:

Updated ID for feature and deps.
Ola Spjuth committed 931f9a2c:

Merge branch 'master' of git://github.com/goglepox/bioclipse.structuredb
Ola Spjuth committed 6f9aee7a:

Merge branch 'master' of git://github.com/jonalv/bioclipse.structuredb
Ola Spjuth committed 40e12ddc:

Fixed threading problem.

jonalv created tag 2.2.0.RC2 at jonalv/bioclipse.structuredb Mon Dec 07 09:23:47 -0800 2009

New tag is at jonalv/bioclipse.structuredb/tree/2.2.0.RC2

jonalv pushed to 2.2.x at olas/bioclipse.core Mon Dec 07 05:50:51 -0800 2009

HEAD is 6aabc6847c9b783d39e6da84613dc8148f8cca00

8 commits »

jonalv committed 6aabc684:

Merge remote branch 'origin/2.2.x' into 2.2.x
egonw committed b406ddcc:

Merge branch '2.2.x'
jonalv committed 15055b24:

force 32 bit JVM on Mac
masak committed f8652c0f:

[JsConsoleView] only says 'not found' if not found
jonalv committed abff5d7c:

Added silentAfter timeout to @SilentNotification
jonalv committed 0c2212f5:

implemented @SilentNotification
jonalv committed fd30cd5c:

Merge branch '2.2.x'
jonalv committed d16894d1:

added a " " to debug output

jonalv pushed to 2.2.x at olas/bioclipse.core Mon Dec 07 05:46:43 -0800 2009

HEAD is bd5c9f9fcc6e2bd3c4ca24f0db9dd7c079da60e8

jonalv committed bd5c9f9f:

changed from FormLayout to GridLayout.

jonalv deleted branch jonalv-updatesitesLayout at jonalv/bioclipse.core Fri Dec 04 08:13:14 -0800 2009

Deleted branch was at jonalv/bioclipse.core/tree/jonalv-updatesitesLayout

jonalv pushed to 2.2.x at olas/bioclipse.core Fri Dec 04 07:45:18 -0800 2009

HEAD is 8a4900848a323c9d74a643d0fba0056706cffccd

3 commits »

jonalv pushed to jonalv-updatesitesLayout at olas/bioclipse.core Fri Dec 04 07:29:01 -0800 2009

HEAD is ba39c5adcc09ae2a4d85879ece231a50385aefc4

jonalv committed ba39c5ad:

test to get it right

jonalv created branch jonalv-updatesitesLayout at olas/bioclipse.core Fri Dec 04 07:18:05 -0800 2009

New branch is at olas/bioclipse.core/tree/jonalv-updatesitesLayout

jonalv pushed to 2.2.x at olas/bioclipse.core Fri Dec 04 02:56:10 -0800 2009

HEAD is 599605e3a61c317660372ecbe2380833a7408a6f

2 commits »

jonalv pushed to master at jonalv/bioclipse.structuredb Fri Dec 04 02:55:07 -0800 2009

HEAD is 99ceb724767457be05eeac10e9242f5eb12d40c8

jonalv committed 99ceb724:

set version 2.2.0.RC2

jonalv pushed to master at jonalv/bioclipse.vscreen Fri Dec 04 02:47:57 -0800 2009

HEAD is 1d2bc08a82693849c9eaf9c7f97edc17f5e3fd2c

jonalv committed 1d2bc08a:

use sdb.annotate isntead. Much faster.

jonalv pushed to master at jonalv/bioclipse.structuredb Fri Dec 04 02:45:49 -0800 2009

HEAD is adfd7243779a9fb9d84f342a21120348fad7d2ee

3 commits »