This software was developed by Jose A. Seoane, Ian Day, Colin Campbell, Juan Pablo Casas and Tom Gaunt
This software is based in: -gene-based CCA: A multivatiate test for Association. Ferreira M and Purcell S. Bioinformatics 2009 A gene based test of association using canonical correlation. Tang C and Ferreira M. Bioinformatics 2012 Original source can be found in Manuel Ferreira homepage: http://genepi.qimr.edu.au/staff/manuelF/gene/main.html -genalg R package: Developed by Egon Willghagen http://cran.r-project.org/web/packages/genalg/
The entry points are: gaCCAgenMultipleGene_MultiplePhen_par.R: For multiple gene / multiple phenotype association gaCCAgenMultipleGene_SinglePhen_par.R: For multiple gene / single phenotype association gaCCAgenSingleGene_MultiplePhen_par.R For single gene / multiple phenotype association gaCCAgenSingleGene_SinglePhen_par.R: For single gene / single phenotype association genealg3.R modifies binary genalg using foreach for parallel execution in population fitness evaluation genealgTwoCromosom.R: Mofifies the genealg behaviour to support two populations in the genetic algorithm. One for phenotype and othe for genotype. gene-based.cca3.2.R: Modifies gene-based CCA improving some computation aspects.