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@Snitkin-Lab-Umich
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  1. hogwash hogwash Public

    Three bacterial GWAS methods all rolled into one easy-to-use R package

    R 19 5

  2. simulate_data_for_convergence_based_bGWAS simulate_data_for_convergence_based_bGWAS Public

    Simulation of genotype and phenotype data to benchmark hogwash, a convergence based bacterial genome-wide association study (bGWAS) method

    R 1

  3. Snitkin-Lab-Umich/prewas Snitkin-Lab-Umich/prewas Public

    R package to perform data pre-processing for more informative bacterial GWAS

    R 5 3

  4. clinical_cdifficile_trehalose_variants clinical_cdifficile_trehalose_variants Public

    Analysis of association between trehalose utilization variants in clinical C. difficile isolates and infection severity

    R 1

  5. cdifficile_gwas cdifficile_gwas Public

    GWAS on C. difficile

    R