Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove the "Incomplete adapter sequence" warning #780

Open
marcelm opened this issue Apr 23, 2024 · 0 comments
Open

Remove the "Incomplete adapter sequence" warning #780

marcelm opened this issue Apr 23, 2024 · 0 comments

Comments

@marcelm
Copy link
Owner

marcelm commented Apr 23, 2024

Cutadapt is used quite often to trim primer sequences, in which case it is expected that the "adapter" (primer) is not preceded/followed by a random nucleotide, but a specific one.

The warning was added to prevent people from providing an Illumina adapter that is missing the initial A. Instead, we could directly check for the Illumina adapter sequence (and only that one).

cf #779

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant