0.7: Update main.nf

among others:

• Better handling of empty alignment files and no lineages found
• more parameters to control gc-assembly
• extended and updated documentation

0.6

• Update existing and improve documentation
• Use conda for handling installation of most dependencies in the Singularity recipe.

0.5

Include md5 checksums in reference packages

0.4: Change execution and handling of data.jar in megan, making it easier …

• changed the way MEGAN tools are executed, allowing for direct use of local (without eggnog Ids) reference sequences

0.3

changed some things in the structure of the pipeline, most notably It now computes the tree for each reference OG only once, and then uses the evolutionary placement algorithm (https://www.biorxiv.org/content/early/2018/04/17/291658) to place contigs into those trees.

Minor bug fixes

• Fix ete3 dependencies in the Debian image
• remove deprecated option from MEGAN tools

Changed Singularity image

• Changed How TaxIDs are handled, so that it can be easily rerun on different query lineages
• Migrated the Singularity image's base from Arch to Debian stretch

0.1

Add License