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Achievement: Pull SharkAchievement: Arctic Code Vault ContributorAchievement: Starstruck
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@deweylab @stewart-lab
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Pinned

  1. deweylab/MetaSRA-pipeline deweylab/MetaSRA-pipeline Public

    MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

    Python 41 14

  2. deweylab/CellO deweylab/CellO Public

    CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

    Jupyter Notebook 60 11

  3. SpatialCorr SpatialCorr Public

    SpatialCorr: Identify gene sets with spatially varying correlation

    Jupyter Notebook 10 4

  4. SpatialCorr-sim SpatialCorr-sim Public

    SpatialCorr-sim: Simulate spatial transcriptomics data with spatially varying correlation

    Jupyter Notebook 5 1

  5. immunitastx/monkeybread immunitastx/monkeybread Public

    Analyzing cellular niches in spatial transcriptomics data

    Python 22 3

  6. hypothesis-driven-SRA-queries hypothesis-driven-SRA-queries Public

    Find structured-datasets from within the Sequence Read Archive

    Jupyter Notebook 3 1