A Clojure library for basic statistical analysis using permutation testing and Benjamini-Hochberg false discovery rate (FDR) correction for multiple comparisons
Creator: Matthew Robert Graham Brown Created: July 11, 2019
Current version: 0.1.1-SNAPSHOT
clojure version 1.10.1 random-seed version 1.0.0
Clone mrgbstats from the Github repository:
git clone https://github.com/mbrown/mrgbstats
Install mrgbstats locally in your Maven .m2 folder, using leiningen:
cd mrgbstats
lein do clean, pom, jar, install
or using boot:
cd mrgbstats
boot clean; boot pom; boot jar; boot install
In your project.clj file, add dependency:
[mrgbstats "0.1.0-SNAPSHOT"]Clojure code:
(require '[mrgbstats.core :as mrgbstats])
(mrgbstats/permtest a b numiter) ; a, b = vectors of values; numiter = integer
(mrgbstats/fdr pvec) ; pvec = vector of p-values(require '[mrgbstats.core :as mrgbstats])
(mrgbstats/permtest [3 2 3 2 3 3 2 1 2 3] [5 4 2 4 2 7 3 5 6] 1000)
(mrgbstats/fdr [0.1 0.035 0.042 0.04 0.01 0.45 0.8 0.001 0.02 0.01 0.008])Copyright © Matthew Robert Graham Brown 2019
This program and the accompanying materials are made available under the terms of the Eclipse Public License 2.0 which is available at http://www.eclipse.org/legal/epl-2.0.