Genome Annotator

This workflow is designed to annotate the genes a set of genomes (nucleotide fasta files) with InterProScan and MetaCyc pathways and other genome properties.

Authors

• Silas Kieser (@silask)

Dependencies

For now, InterProScan v5 and genomeProperties should be installed. In future this installation will be automated.

Usage

snakemake --config input="path/to/genome.fasta"

or for a set of genomes:

snakemake --config input="path/to/genomes"

For more detailed configuration see the config.yaml

Cluster execution

Execute the workflow locally via

snakemake --cores $N

using $N cores or run it in a cluster environment via

snakemake --cluster qsub --jobs 100

or

snakemake --drmaa --jobs 100

See the Snakemake documentation for further details.