MokaGuys
Popular repositories
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automate_demultiplex
automate_demultiplex PublicScripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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dnanexus_swiss_army_SNP_bcftools_filter
dnanexus_swiss_army_SNP_bcftools_filter PublicThis repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks
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Repositories
- dnanexus_oncodeep_upload Public
- oncodeep_upload Public
- automate_demultiplex Public
Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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- dnanexus_multiqc Public
DNAnexus app running MultiQC to generate run wide quality control (QC) using the outputs from MokaAMP, MokaPipe and MokaWES pipelines
- dnanexus_happy Public
DNAnexus app comparing a query VCF to a truth VCF to calculate performance metrics including sensitivity and precision using hap.py and vcfeval