malariaModelFit

Rcpp package containing code for fitting the malaria model by MCMC.

Installation

malariaModelFit relies on the Rcpp package, which requires the following OS-specific steps:

• Windows
  • Download and install the appropriate version of Rtools for your version of R. On installation, ensure you check the box to arrange your system PATH as recommended by Rtools
• Mac OS X
  • Download and install XCode
  • Within XCode go to Preferences : Downloads and install the Command Line Tools
• Linux (Debian/Ubuntu)

  • Install the core software development utilities required for R package development as well as LaTeX by executing

    sudo apt-get install r-base-dev texlive-full
    

Next, in R, ensure that you have the devtools package installed by running

install.packages("devtools", repos='http://cran.us.r-project.org')

Then install the malariaModelFit package directly from GitHub by running

devtools::install_github("mrc-ide/malariaModelFit")

Finally, we need to load the package:

library(malariaModelFit)