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fix publish-to-pypi workflow #637

fix publish-to-pypi workflow

fix publish-to-pypi workflow #637

name: Notebooks
on: [push]
jobs:
build:
runs-on: ubuntu-latest
steps:
# This cancels any such job that is still running
- name: Cancel Previous Runs
uses: styfle/cancel-workflow-action@0.6.0
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v4
- name: Set up Python 3.10
uses: actions/setup-python@v4
with:
python-version: '3.10'
- name: Install graphviz
run: |
sudo apt-get install -y graphviz graphviz-dev
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install pathos pygraphviz neuron cloud-volume k3d scikit-image open3d
python -m pip install -e .[test-notebook]
- name: Run notebooks
env:
NEUPRINT_APPLICATION_CREDENTIALS: ${{ secrets.neuprint }}
INSECT_BRAIN_DB_USER: ${{ secrets.insect_brain_db_user }}
INSECT_BRAIN_DB_PASSWORD: ${{ secrets.insect_brain_db_password }}
run: |
python tests/test_notebooks.py