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33 Open 17 Closed
33 Open 17 Closed
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Issues list

SF12_create_panGenome import ete_tree_split
#62 opened Mar 15, 2024 by delavegapab
IOError: [Errno 2] No such file or directory: '/home/a/Desktop/pan-genome-analysis/data/geneCluster/old_clusters_longSplit.txt'
#59 opened Mar 24, 2023 by faraziAnindo
1
[Errno 2] No such file or directory: -> tmp_core_diversity.txt
#58 opened Jan 20, 2023 by Calvin2077
2
panX output file created but it empty?
#57 opened Oct 3, 2022 by neelam19051
run-TestSet.sh: 25: ./panX.py: Permission denied
#56 opened Aug 19, 2022 by Dimpledavray287
1
error running the test set in the py3 branch
#55 opened Jul 22, 2022 by themudo
Step for generation of archive all_protein_seq.cpk
#52 opened May 11, 2022 by GitHublilo
Failed to export myPangenome's geneCluster.json (step 10)
#51 opened Apr 20, 2022 by jhcuarta
Roary output visualization using panX
#50 opened Feb 9, 2022 by leabact
ValueError
#49 opened Jan 13, 2022 by byeollee
Could this software uesd in animal?
#48 opened Oct 11, 2021 by ld9866
2
PanX visualization: No gene tree
#47 opened Jul 22, 2021 by MarietteEK
1
Issue with Step-09
#46 opened Jul 15, 2021 by raavan-deka
step 11: ValueError: need more than 1 value to unpack
#44 opened Mar 28, 2021 by NA1919
docs still state to install miniconda2
#41 opened Dec 9, 2020 by nick-youngblut
2
Running workflow for new data
#40 opened Nov 24, 2020 by smb20200615
Failed to read gbff files
#39 opened Aug 20, 2020 by oeco28
DIAMOND fails to produce pairwise alignments in Step 5
#38 opened Aug 5, 2020 by awalling
Biopython Parser Warning
#37 opened Jun 17, 2020 by kbojanic
xb_xref err
#36 opened May 22, 2020 by Bruce-BC
Long running time or bug?
#35 opened Apr 22, 2020 by Zick007
2
Failed to run Test
#34 opened Apr 15, 2020 by stheil15
3
How to prepare file "stran_list"(step 01) ?
#32 opened Nov 28, 2019 by fengshuo112
Running sh run-TestSet.sh cause error
#31 opened Nov 9, 2019 by OlegKotcar
3
Very diverse pangenome?
#30 opened Aug 1, 2019 by apredeus
1
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