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Achievement: StarstruckAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: YOLOAchievement: Arctic Code Vault Contributor
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noamteyssier/README.md

Hello!

I'm Noam Teyssier, a Bioinformatics PhD Candidate in the Kampmann Lab and Goodarzi Lab at UCSF.

I work at the intersection of functional genomics, machine learning, dynamical modeling, and systems biology in the context of neurodegenerative diseases.

I highly value open source and try to share all the tools I've developed during my own research.

Pinned

  1. gia gia Public

    gia: Genomic Interval Arithmetic

    Rust 48 2

  2. ggetrs ggetrs Public

    Efficient querying of biological databases

    Rust 28 2

  3. adpbulk adpbulk Public

    pseudobulking on an AnnData object

    Python 20 1

  4. sgcount sgcount Public

    A flexible and fast sgRNA counter from FASTQ Files

    Rust 8

  5. idea idea Public

    Integrated Differential Expression and Annotation

    HTML 3

  6. geomux geomux Public

    hypergeometric testing of guide RNA identity to assign cell barcodes to a guide identity

    Python 1 1