URL patterns and their differences between Explorer 1 and Explorer 2
- Exp1: http://explorer.openphacts.org/#!p=CmpdByNameForm&u=http://www.conceptwiki.org/concept/dd758846-1dac-4f0d-a329-06af9a7fa413
- Exp2: http://explorer2.openphacts.org/compounds?uri=http://www.conceptwiki.org/concept/dd758846-1dac-4f0d-a329-06af9a7fa413
| Explorer 1 | Explorer 2 |
|---|---|
| #!p=CmpdByNameForm&u= | compounds?uri= |
- Exp1: http://explorer.openphacts.org/#!p=PharmByCmpdNameForm&u=http://www.conceptwiki.org/concept/dd758846-1dac-4f0d-a329-06af9a7fa413
- Exp2: http://explorer2.openphacts.org/compounds/pharmacology?uri=http://www.conceptwiki.org/concept/dd758846-1dac-4f0d-a329-06af9a7fa413
| Explorer 1 | Explorer 2 |
|---|---|
| #!p=PharmByCmpdNameForm&u= | compounds/pharmacology?uri= |
- Exp1: No URL, is a function of structure search form and the functionality is often broken due to third part dependencies
- Exp2: http://explorer2.openphacts.org/compounds/draw?smiles=CC1%3DC(C(%3DCC%3DC1)C(%3DO)O)OC(%3DO)C
URL pattern is compounds/draw?smiles= where the SMILES has been URL encoded.
-
Explorer 1 exact http://explorer.openphacts.org/#!p=SimSearchForm&sm=CC(=O)OC1=CC=CC=C1C(=O)O&st=exact
-
Explorer 1 substructure http://explorer.openphacts.org/#!p=SimSearchForm&sm=CC(=O)OC1=CC=CC=C1C(=O)O&st=sub
-
Explorer 1 similarity http://explorer.openphacts.org/#!p=SimSearchForm&sm=CC(=O)OC1=CC=CC=C1C(=O)O&st=sim
-
Explorer 2 exact http://explorer2.openphacts.org/compounds/structure?smiles=CC(%3DO)OC1%3DCC%3DCC%3DC1C(%3DO)O&type=exact
-
Explorer 2 substructure http://explorer2.openphacts.org/compounds/structure?match=0&records=100&smiles=CC(%3DO)OC1%3DCC%3DCC%3DC1C(%3DO)O&threshold=0.9&thresholdtype=0&type=substructure
-
Explorer 2 similarity http://explorer2.openphacts.org/compounds/structure?match=0&records=100&smiles=CC(%3DO)OC1%3DCC%3DCC%3DC1C(%3DO)O&threshold=0.9&thresholdtype=0&type=similarity
The start of the URL pattern in Explorer 1 is #!p=SimSearchForm&sm= and in Explorer 2 is compounds/structure?smiles=
The URL then includes parameters defining the type of structure search:
| Explorer 1 | Explorer 2 |
|---|---|
| &st=exact | &type=exact |
| &st=sub | &type=substructure |
| &st=sim | &type=similarity |
There are also additional parameters for substructure and similarity search for threshold, match, records and thresholdtype. See the API docs for further details. Substructure only uses records and ignores the rest.
- Explorer 1 http://explorer.openphacts.org/#!p=TargetByNameForm&u=http://www.conceptwiki.org/concept/b932a1ed-b6c3-4291-a98a-e195668eda49
- Explorer 2 http://explorer2.openphacts.org/targets?uri=http://www.conceptwiki.org/concept/b932a1ed-b6c3-4291-a98a-e195668eda49
| Explorer 1 | Explorer 2 |
|---|---|
| #!p=TargetByNameForm&u= | targets?uri= |
- Explorer 1 http://explorer.openphacts.org/#!p=PharmByTargetNameForm&u=http://www.conceptwiki.org/concept/b932a1ed-b6c3-4291-a98a-e195668eda49
- Explorer 2 http://explorer2.openpahcts.org/targets/pharmacology?uri=http://www.conceptwiki.org/concept/b932a1ed-b6c3-4291-a98a-e195668eda49
| Explorer 1 | Explorer 2 |
|---|---|
| #!p=PharmByTargetNameForm&u= | targets/pharmacology?uri= |
Explorer 1 can only show the enzyme hierarchy.
- Explorer 1 http://explorer.openphacts.org/#!p=PharmEnzymeForm&ec=1.1.1.1
- Explorer 2 http://explorer2.openphacts.org/trees/pharmacology?uri=http%3A%2F%2Fpurl.uniprot.org%2Fenzyme%2F1.1.1.1
| Explorer 1 | Explorer 2 |
|---|---|
| #!p=PharmEnzymeForm&ec= | trees/pharmacology?uri= |
Explorer 2 can also show the other hierarchies available in API version 1.3+.