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Pinned

  1. kundajelab/genomedisco kundajelab/genomedisco Public

    Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

    Jupyter Notebook 25 10

  2. kundajelab/3DChromatin_ReplicateQC kundajelab/3DChromatin_ReplicateQC Public

    Software to compute reproducibility and quality scores for Hi-C data

    Python 41 16

  3. kundajelab/chromovar3d kundajelab/chromovar3d Public

    Code from the chromatin variation 3d project

    JavaScript 6 3

  4. klarman-cell-observatory/perturbseq klarman-cell-observatory/perturbseq Public

    Perturb-seq analysis package

    Python 12 3

  5. kundajelab/crispr_safe_targeting_regions kundajelab/crispr_safe_targeting_regions Public

    Repository for creating the CRISPR controls termed "safe harbor" regions from Morgens et al., 2017, Nat Comms.

    Shell 1