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@pdxgx

pdxgx

Computational biology software developed in collaborations led by Abhi Nellore and Reid Thompson

Popular repositories

  1. neoepiscope neoepiscope Public

    predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data

    Python 26 17

  2. covid19 covid19 Public

    covid19 exploration

    R 9 4

  3. pepsickle pepsickle Public

    A context aware tool for proteasomal cleavage predictions

    Python 8 2

  4. immunorx_response_pipeline immunorx_response_pipeline Public

    Python 4 1

  5. ri-tests ri-tests Public

    Supporting materials for "Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads"

    R 3

  6. neoepiscope-paper neoepiscope-paper Public

    Scripts for reproducing results from neoepiscope paper

    Python 2 1

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