Getting started with Django development server

1. Install requirements

• Python >=2.7,<3
• PostgreSQL
• RabbitMQ

2. Install Python packages

$ pip install -r requirements/development.txt

3. Configure settings.py

$ ${EDITOR} pergenie/settings/development.py  # e.g. pergenie/settings/development.py.example

4. Create PostgreSQL user and database

$ createuser pergenie --password
$ createdb pergenie -O pergenie

5. DB migration

$ python manage.py migrate

6. Init data

$ python manage.py createsuperuser
$ python manage.py update_gwascatalog
$ python manage.py setup_go_vcf_tools
$ python manage.py init_demo_user

7. Run Celery for job queing

$ DJANGO_SETTINGS_MODULE=pergenie.settings.development celery --app=pergenie worker

8. Run development server

$ python manage.py runserver

9. Browse application at http://127.0.0.1:8000/

Notice

About public data resources

Versions of public data resources are pinned as follows:

Resources	Versions
Human Reference Genome	GRCh37p13
dbSNP	b144

About html design data

• Currently, main design data (static/vendor/wood-admin/stylesheets/application.css) is not included in this repository. You can purchase from wrapbootstrap.com/theme/wood-admin-theme-WB0941911. Sorry for inconvenience.

• Following open source stylesheet/image/javascript products are used under the each license:

  • Bootstrap, Apache License v2.0
  • Highcharts JS, for free under the Creative Commons Attribution-NonCommercial 3.0 License
  • jQuery, MIT License
  • jQuery MultiFile, MIT License
  • Peity, MIT License
  • Intro.js, MIT License
  • google/code-prettify, Apache License v2.0

License

See LICENSE