A5ud pipeline.
This package was an update to original software developed by Andrew Tritt and Aaron Darling for the original A5 pipeline (Tritt et al. 2012 PLoS ONE, no longer available here: http://code.google.com/p/ngopt/). This code was further modified by Nick Youngblut but is no longer available on GitHub https://github.com/nyoungb2/a5ud_pipeline. Subsquent updates by the original author A. Darling was posted in 2014 to https://sourceforge.net/projects/ngopt/ and published Coil et al. 2015 Bioinformatics