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I assume that you are talking about the spacetree. The fundamental idea of the spacetree is that it uses the available space to its best. On a left-oriented spacetree canvas-height can pose an ugly constraint forcing the user to "scroll" the content into the available space by clicking on one of the outer-most nodes. In my opinion scrolling the canvas would blur the characteristics of a spacetree. Maybe it would be better to automatically divide the subtree into n subtrees that each fit into the available space. Each subtree should be named automatically, for instance, "1 to 40 of 79" and "41 to 79 of 79". This way you would introduce new "artificial" levels but stay on the canvas. I think users are quite used to this kind of "page 2 of 3" idioms. And it's easier to remember on which subtree "page" you were than the position of your vertical scrollbar.