RELEASE_NOTES.rdoc

BioRuby 1.4.2 RELEASE NOTES¶ ↑

A lot of changes have been made to the BioRuby 1.4.2 after the version 1.4.1 is released. This document describes important and/or incompatible changes since the BioRuby 1.4.1 release.

For known problems, see KNOWN_ISSUES.rdoc.

New features¶ ↑

(to be written)¶ ↑

Bug fixes¶ ↑

Bio::Blast¶ ↑

• Failure of remote BLAST execution is fixed, due to the changes in GenomeNet and DDBJ.

• When executing remote BLAST with “genomenet” server, options “-b” and “-v” are now correctly used to limit the number of hits to be reported.

Other bug fixes¶ ↑

Incompatible changes¶ ↑

Bio::Blast with the remote GenomeNet server¶ ↑

When executing remote BLAST with “genomenet” server, options “-b” and “-v” are now correctly used to limit the number of hits to be reported. In 1.4.1 and before, “-B” and “-V” were mistakenly used for the purpose.

Known issues¶ ↑

The following issues are added or updated. See KNOWN_ISSUES.rdoc for other already known issues.

(to be written)¶ ↑