singularity-hmmer

Singularity recipe for hmmer.

Installing the container on Bridges 2

Copy the

• SIF file
• and the alimask, hmmbuild, hmmemit, hmmpgmd, hmmscan, hmmstat, phmmer, hmmc2, hmmfetch, hmmpgmd_shard, hmmsearch, jackhmmer, nhmmer, hmmalign, hmmconvert, hmmlogo, hmmpress, hmmsim, makehmmerdb, nhmmscan scripts

to /opt/packages/hmmer/3.3.1.

Copy the file modulefile.lua to /opt/modulefiles/hmmer as 3.3.1.lua.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

To run tests

To run the available tests, run the command

bash ./test.sh

---

Copyright © 2020-2021 Pittsburgh Supercomputing Center. All Rights Reserved.

The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.