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singularity-picard

Singularity recipe for Picard.

Installing the container on Bridges 2

Copy the

  • SIF file
  • and the picard script

to /opt/packages/picard/2.23.2.

Copy the file modulefile.lua to /opt/modulefiles/picard as 2.23.2.lua.

Building the image using the recipe

To build the image locally

Run the script build.sh to build image locally.

bash ./build.sh

To build the image remotely

Run the script rbuild.sh to build image remotely.

bash ./rbuild.sh

Copyright © 2020-2021 Pittsburgh Supercomputing Center. All Rights Reserved.

The Biomedical Applications Group at the Pittsburgh Supercomputing Center in the Mellon College of Science at Carnegie Mellon University.

About

Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

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