fix: improve parsing performance #1227
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jmarshall
approved these changes
Sep 28, 2023
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Thanks. I was going to wait for this to come in with the next HTSlib import, but since samtools/htslib#1674 has already been merged and we use kseq within pysam, it's worth applying it now. |
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An original fix was submitted by @kloetz to seqtk repo. Improves FASTA parsing to 2GB/s .
See: