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update
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telatin committed Mar 15, 2021
1 parent ef19947 commit 3097ee7
Showing 1 changed file with 6 additions and 5 deletions.
11 changes: 6 additions & 5 deletions start-asap
Expand Up @@ -12,7 +12,7 @@ use Data::Dumper;
use File::Copy;
use Pod::Usage;
use utf8;
my $VERSION = '1.2.1';
my $VERSION = '1.3.0';
my $cmd_string = File::Spec->catfile($RealBin, basename($0) ) . ' "' . join('" "', @ARGV) .'"';

my $opt_output;
Expand All @@ -27,7 +27,7 @@ my $opt_project_name = 'ASA3P_Project';
my $opt_project_description = 'Isolate genomes sequencing';
my $opt_user_name = 'User';
my $opt_user_surname = '';
my $opt_user_mail = 'asap@exampe.com';
my $opt_user_mail = 'asap@example.com';
my $opt_genus = 'Bacterium';
my $opt_species = 'sp.';
my $warnings = 0;
Expand Down Expand Up @@ -91,6 +91,7 @@ if (! -d "$opt_output") {
}

}

mkdir File::Spec->catdir("$opt_output", 'data');
my $config_file = File::Spec->catfile("$opt_output", 'config.xls');

Expand All @@ -101,10 +102,10 @@ if (defined $opt_project_info) {

my $project_name = $project_data->{'project_name'} // $opt_project_name;
my $project_description = $project_data->{'project_description'} // $opt_project_description;
my $user_mail = $project_data->{'user_mail'} // $opt_user_mail;
my $user_name = $project_data->{'user_name'} // $opt_user_name;
my $user_mail = $project_data->{'user_mail'} // $opt_user_mail;
my $user_name = $project_data->{'user_name'} // $opt_user_name;
my $user_surname = $project_data->{'user_surname'} // $opt_user_surname;
my $genus = $project_data->{'genus'} // $opt_genus;
my $genus = $project_data->{'genus'} // $opt_genus;
$opt_for_tag = $project_data->{'for_tag'} // $opt_for_tag;
$opt_rev_tag = $project_data->{'rev_tag'} // $opt_rev_tag;
$opt_single_separator = $project_data->{'opt_single_separator'} // $opt_single_separator;
Expand Down

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