regen doc #401
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - devel | |
| pull_request: | |
| branches: | |
| - master | |
| - devel | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| #- {os: windows-latest, r: 'devel', rglusenull: "true"} | |
| - {os: windows-latest, r: 'release', rglusenull: "true"} | |
| #- {os: windows-latest, r: '3.6', rglusenull: "true"} | |
| #- {os: macOS-latest, r: 'release', rglusenull: "true"} | |
| - {os: ubuntu-latest, r: 'release'} | |
| #- {os: ubuntu-latest, r: 'devel'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| RGL_USE_NULL: ${{ matrix.config.rglusenull }} | |
| RSPM: ${{ matrix.config.rspm }} | |
| NOT_CRAN: true | |
| OMP_NUM_THREADS: 1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Brew and macOS config | |
| if: runner.os == 'macOS' | |
| run: | | |
| # conflicts with gfortran from r-lib/actions when linking gcc | |
| rm '/usr/local/bin/gfortran' | |
| brew install gdal proj geos | |
| brew install --cask xquartz | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-2-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-2- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo add-apt-repository ppa:ubuntugis/ubuntugis-unstable | |
| sudo apt update | |
| sudo apt install \ | |
| libgdal-dev \ | |
| libgeos++-dev \ | |
| libudunits2-dev \ | |
| libproj-dev \ | |
| libx11-dev \ | |
| libgl1-mesa-dev \ | |
| libglu1-mesa-dev \ | |
| libfreetype6-dev \ | |
| libnode-dev \ | |
| libxt-dev \ | |
| libfftw3-dev | |
| - name: Install dependencies | |
| run: | | |
| install.packages("BiocManager") | |
| BiocManager::install("EBImage") | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| remotes::install_cran("covr") | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Test coverage | |
| if: matrix.config.os == 'ubuntu-20.04' && matrix.config.r == 'devel' | |
| run: covr::codecov(type = "all") | |
| shell: Rscript {0} |