NanocourseExample

RNASEQ.R script contains everything necessary to get counts from BAM files, get gene and GO annotations, make gene expression heatmaps, and perform principal coordinates analysis

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
arrayQualityMetrics report for e		arrayQualityMetrics report for e
CC_GO_logP.csv		CC_GO_logP.csv
DESeq2data.Rdata		DESeq2data.Rdata
GO_CC.pdf		GO_CC.pdf
GO_MF.pdf		GO_MF.pdf
GO_logP.csv		GO_logP.csv
GO_logP.csv.BP.tmp		GO_logP.csv.BP.tmp
LFC.csv		LFC.csv
MF_GO_logP.csv		MF_GO_logP.csv
MWU_CC_GO_logP.csv		MWU_CC_GO_logP.csv
MWU_MF_GO_logP.csv		MWU_MF_GO_logP.csv
PCoA_HullTreatment.pdf		PCoA_HullTreatment.pdf
PCoA_SpiderCell.pdf		PCoA_SpiderCell.pdf
PCoA_SpiderTreatment.pdf		PCoA_SpiderTreatment.pdf
README.md		README.md
RLDandPVALS.csv		RLDandPVALS.csv
RNASEQ.R		RNASEQ.R
TopDEGs_heatmap.pdf		TopDEGs_heatmap.pdf
biomartGENE.tab		biomartGENE.tab
biomartGO.tab		biomartGO.tab
biomartGONR.tab		biomartGONR.tab
dissim_CC_biomartGONR.tab		dissim_CC_biomartGONR.tab
dissim_MF_biomartGONR.tab		dissim_MF_biomartGONR.tab
go.obo		go.obo
go.pdf		go.pdf
gomwu.functions.R		gomwu.functions.R
gomwu_a.pl		gomwu_a.pl
gomwu_b.pl		gomwu_b.pl
nrify_GOtable.pl		nrify_GOtable.pl
resultsTable.csv		resultsTable.csv

rachelwright8/NanocourseExample

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