Skip to content
@rasigadelab

PHE3ID Public Health, Epidemiology & Evolutionary Ecology of Infectious Diseases

We research ecology and evolution of pathogens, especially multidrug-resistant bacteria

Popular repositories

  1. covid-npi covid-npi Public

    Impact of non-pharmaceutical interventions on the spread of the Covid-19 pandemic

    R 1 1

  2. metapop metapop Public

    Accompanying code for Shapiro et al. 2019

    R 1

  3. thd thd Public

    Time-scaled haplotypic density (THD) implementation for R. Estimates epidemic success from pathogen genetic data.

    R

  4. severecap severecap Public

    Analysis code for Gillet et al. 2020

    R

  5. rlabutils rlabutils Public

    Common QoL utilities

    R

  6. taxonresolve taxonresolve Public

    Description

    Python 1

Repositories

Showing 9 of 9 repositories
  • fpoiscpm Public

    Detect change of fuzzy event rate

    R 0 AGPL-3.0 0 0 0 Updated Mar 28, 2024
  • taxonresolve Public

    Description

    Python 0 AGPL-3.0 1 0 1 Updated Dec 13, 2022
  • xdrtb_thd Public

    Accompanying code for Merker at al 2022.

    R 0 AGPL-3.0 0 0 0 Updated Jul 13, 2022
  • macotra-metabarcoding Public
    R 0 MIT 0 0 0 Updated May 5, 2022
  • covid-npi Public

    Impact of non-pharmaceutical interventions on the spread of the Covid-19 pandemic

    R 1 MIT 1 0 0 Updated Oct 31, 2020
  • rlabutils Public

    Common QoL utilities

    R 0 0 0 0 Updated Oct 30, 2020
  • metapop Public

    Accompanying code for Shapiro et al. 2019

    R 0 MIT 1 0 0 Updated Sep 30, 2020
  • severecap Public

    Analysis code for Gillet et al. 2020

    R 0 MIT 0 0 0 Updated Jul 30, 2020
  • thd Public

    Time-scaled haplotypic density (THD) implementation for R. Estimates epidemic success from pathogen genetic data.

    R 0 MIT 0 0 0 Updated Apr 10, 2020

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…