This repository contains the R code and parameters needed to run next generation matrix models developed for Kyasanur Forest Disease in India. For more information see https://doi.org/10.1371/journal.pntd.0011300
NGM_Cattle.R will run the model scaling tick abundance and burden by cattle density. NGM_Habitat.R will run the model scaling tick abundance and burden by habitat type.
.csv files needed to run the models are stored in the 'parameters' folder.
Please cite the following paper (https://doi.org/10.1371/journal.pntd.0011300) if using or adapting this code.