Skip to content

Issues: satijalab/seurat

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

452 Open 7,072 Closed
452 Open 7,072 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Error when loading VisiumHD using Seurat 5.1
#8876 opened May 10, 2024 by DaiZYlab
About FindVariableFeature selection
#8875 opened May 9, 2024 by kiwipeel
different UMAPS from the same data
#8874 opened May 9, 2024 by TsviyaOlender
Issues with subsetting old Seurat objects with Seurat v5 Error in strsplit(x = colnames(Embeddings(object = value)), split = "_") : non-character argument
#8869 opened May 7, 2024 by AlonsoOga
FindAllMarkers and obj@assays$Spatial@data
#8868 opened May 7, 2024 by mtrussart
An issue with running FindTransferAnchors on SCT-processed data.
#8867 opened May 7, 2024 by minghao622
SpatialFeaturePlot: change font size of color scale so gene name is legible
#8865 opened May 6, 2024 by felixmrevmed
How to split ome.tiff image? I need to do cell segmentation but my image is too large and I need to split it. Thank you.
#8864 opened May 6, 2024 by Mona-Khorani
2
[PowerPC] Errors is test_integration5 and test_load_10X [ FAIL 4 | WARN 0 | SKIP 29 | PASS 532 ] bug Something isn't working
#8862 opened May 6, 2024 by barracuda156
Issue with Running Seurat(v5.0.3) on Correlation Matrix Data bug Something isn't working
#8860 opened May 5, 2024 by adesalegn
1
FindAllMarkers - fc.name column is "avg_log2FC" with "scale.data" slot, rather than "avg_diff" bug Something isn't working
#8859 opened May 5, 2024 by lucygarner
subset() function does not respect the order of indices
#8857 opened May 4, 2024 by dolchan
How to access Seurat metadata column as a changing variable?
#8856 opened May 3, 2024 by Yijia-Jiang
Error in CreateSeuratObject
#8855 opened May 3, 2024 by scas224
IntegrateLayers() ISSUE with small dataset: Error in idx[i, ] <- res[[i]][[1]]: number of items to replace is not a multiple of replacement length
#8854 opened May 3, 2024 by ASNbioinf
1
After performing FindIntegrationAnchors, I generated an integrated assay, but my RNA assay data was deleted.
#8852 opened May 3, 2024 by yaoli00
Getting Multiple Genes on a single RidgePlot?
#8850 opened May 2, 2024 by ariskare
ScaleData before of after FindIntegrationAnchors documentation Error in documentation
#8849 opened May 2, 2024 by yinshiyi
All cells in images must be present in the Seurat object(Xenium data)[subset with Xenium error]
#8848 opened May 2, 2024 by ilovegreentea
Adding polygon information Cosmx to Seurat
#8847 opened May 2, 2024 by roanvanscheppingen
AddModuleScore or PercentageFeatureSet for regression
#8846 opened May 2, 2024 by davide-angeletti
Subsetting and merging back Seurat Object brings different results
#8845 opened May 2, 2024 by LeaLe88
1
Remove empty image slots after SplitObject()
#8844 opened May 1, 2024 by whitneyt1
Error in .GetSeuratCompat(): Function ".GetSeuratCompat" not found bug Something isn't working
#8841 opened Apr 30, 2024 by User87132
Warning when parallelizing JackStraw bug Something isn't working
#8840 opened Apr 30, 2024 by simang5c
ProTip! Updated in the last three days: updated:>2024-05-07.