CellTrackVis: Interactive Browser-based Visualization for Analyzing Cell Trajectories and Lineages

The code for the official implementation of CellTrackVis.

• Tutorial

Introduction

CellTrackVis supports a quick and easy analysis of cell movements with relevant information. Interconnected views help users effortlessly discover meaningful patterns of cell motions and divisions, and also each component is customizable for various biological tasks.

Quick Start

Requirements:

• macOS, Linux, or Windows
• Python 3.7+

Steps of using CellTrackVis:

• Install Python ref to Download Python.

• Download the source codes and extract files.

• The directory of CellTrackVis shows the following structure:

CellTrackVis
    |server.py
    |celltrackvis.html
    |data
      |...
    |images
      |...
    |importers
      |...

• Run CelTrackVis server.

python server.py

• After running the server, CellTrackVis is available on the web browser (e.g., Chrome).

127.0.0.1:8000/celltrackvis.html

Please follow tutorial for more details.

License

This project is licensed under the GNU General Public License v3.0 - see the LICENSE file for details.