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Expose _vectorize_counts_and_tree #2010

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mortonjt opened this issue Apr 18, 2024 · 0 comments
Open

Expose _vectorize_counts_and_tree #2010

mortonjt opened this issue Apr 18, 2024 · 0 comments

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@mortonjt
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mortonjt commented Apr 18, 2024

As shown in the PhyloRPCA paper, leveraging internal node counts in the tree (in addition to tip abundances) can double the accuracy in downstream ML pipelines. It makes a lot of sense to directly expose this functionality, which is leveraged internally within fast unifrac

https://github.com/scikit-bio/scikit-bio/blob/main/skbio/diversity/_util.py#L122

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