aphid v1.1.0

aphid 1.1.0

• Added posterior probabilities for PHMMs.

• derivePHMM.list seed selection changed from max length to most common length.

• Fixed issue in 'align' causing distance matrix error if seqweights not
  set to NULL (thanks to Ben Margetts for bug report).

• Updated dependency list to include kmer instead of phylogram.

Initial CRAN release

Released on CRAN 2017-06-24.