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38 Open 79 Closed
38 Open 79 Closed
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Issues list

Maxmium input for RunMeme()?
#117 opened Feb 27, 2024 by LuBeifang
@snystrom
6
runAme(sequences, control = "shuffle", evalue_report_threshold = 30) get FATAL: Template does not contain data section
#116 opened Jan 24, 2024 by danli349
@snystrom
2
runmeme breaks when providing control
#114 opened Dec 1, 2023 by seb-mueller
@snystrom
4
Parse genomic coord behavior changed in 5.5.4
#113 opened Nov 1, 2023 by snystrom
@snystrom
glam2 for variable length motif discovery
#112 opened Nov 1, 2023 by seb-mueller
@snystrom
5
TomTom error with HOCOMOCOv11 mouse database
#111 opened Sep 27, 2023 by j-andrews7
@snystrom
3
xstreme api
#109 opened Aug 3, 2023 by tbrittoborges Bioc 3.18
@snystrom
1
.html was not found.
#108 opened Jun 15, 2023 by eladzis
@snystrom
12
issues with streme and tomtom under WSL2/Rstudio server documentation Improvements or additions to documentation
#107 opened May 30, 2023 by RaphMet
@snystrom
4
path problems
#105 opened Feb 17, 2023 by theokirkland
5
AME output change in v5.4.0
#96 opened Feb 17, 2022 by snystrom
@snystrom
Sequence sort for plot_sequence_heatmap
#94 opened Jan 21, 2022 by snystrom
data viz to quickly check sequence length distribution enhancement New feature or request
#93 opened Jan 12, 2022 by snystrom
@snystrom
Write unit tests for new vs old importStremeXML behavior
#91 opened Dec 3, 2021 by snystrom
1
runTomTom doesn't throw duplicate motif message when using universalmotif input database bug Something isn't working
#80 opened Mar 27, 2021 by snystrom
@snystrom
OS Check to run* functions
#72 opened Nov 18, 2020 by snystrom Release 1.1
2
is having an "outdir" argument unsafe?
#70 opened Nov 14, 2020 by snystrom Release 1.1
change README example
#69 opened Nov 14, 2020 by snystrom
Add support for STREME
#68 opened Nov 3, 2020 by snystrom Release 1.1
@snystrom
Add support for ENR enhancement New feature or request
#67 opened Nov 3, 2020 by snystrom Release 1.1
@snystrom
Add motif list column to AME output enhancement New feature or request
#66 opened Oct 28, 2020 by snystrom Release 1.1
@snystrom
check that sequence_input has names if a biostrings object
#64 opened Oct 2, 2020 by snystrom
1 task
Release 1.0
@snystrom
Change ame_plot_heatmap_methods to enable pairwise comparison of any method
#60 opened Sep 20, 2020 by snystrom Release 1.1
Export view_motifs method for data.frame
#59 opened Sep 20, 2020 by snystrom
Find TODO sections & fix if needed
#57 opened Sep 9, 2020 by snystrom Release 1.0
@snystrom
ProTip! no:milestone will show everything without a milestone.