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Issues list

multimeres not working with local mmseqs API
#625 opened May 16, 2024 by reyjul
10
Docker image colabfold:1.5.5-cuda12.2.2 returning 100_230517_seq does not exist
#624 opened May 16, 2024 by bmarkus
ModuleNotFoundError BiopythonDeprecationWarning
#623 opened May 15, 2024 by bai717273
3
Extremely slow expandaln step in colabfold_search
#621 opened May 9, 2024 by EvanKomp
Two MSA results in --msa-only output
#620 opened May 7, 2024 by NooraAz
Timeout while submitting to MSA server
#618 opened May 6, 2024 by zhangjuan233
3
ColabFold custom PDB upload
#617 opened May 3, 2024 by mjemmett
1
Error extracting the uniref30
#615 opened May 2, 2024 by ahof1704
AlphaFold2_batch, MSA single_sequence, use_templates
#613 opened Apr 29, 2024 by msimchi
Error Running hhsearch Against pdb100 ("sequence length does not fit to read MSA")
#612 opened Apr 26, 2024 by brucejwittmann
Maximal input size reduction between 1.5.2 and 1.5.5
#611 opened Apr 24, 2024 by nejmeijer
Error in Local Template Search
#610 opened Apr 23, 2024 by GCS-ZHN
colabfold_search failed on custom sequence database
#609 opened Apr 22, 2024 by qiyifei1
Relax_amber notebook
#608 opened Apr 21, 2024 by Jameel9
checkpointing in job submissions
#607 opened Apr 17, 2024 by apal6
Timeout api.colabfold.com server
#606 opened Apr 17, 2024 by rukibuki
10
--prefilter-mode flag incompatible with recommended version of mmseqs (colabfold search)
#604 opened Apr 15, 2024 by NickWoodall
3
RosettaFold2 Colab crashing at end of prediction run
#603 opened Apr 12, 2024 by jfbazan
2
How to save time to predict multimer structure by reusing previous monomer structure results
#601 opened Apr 10, 2024 by xiaoxinbioinfo
2
Folding de novo protein complex is still accessing the server. How can I bypass server?
#600 opened Apr 4, 2024 by johnny-rodriguez
RoseTTAFold2 peptides model prediction with "MAS" named residues!
#599 opened Apr 4, 2024 by Hossen-sahadot97
trying to save compute time by using previous prediction to model next prediction (e.g. now using Amber or making mutation)
#596 opened Apr 3, 2024 by timlevine
1
can colabfold be used to predict loops while leaving the remaining of the protein untouched?
#595 opened Mar 28, 2024 by hima111997
10
Index out of range during the display of 3D structure.
#594 opened Mar 20, 2024 by Nikromet
2
RoseTTAFold.ipynb crashes at "Install and import libraries" step in the google colab
#591 opened Mar 17, 2024 by shafayetrahat
2
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