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Sorger Lab @ Harvard Medical School

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https://sorger.med.harvard.edu/

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indra indra Public

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…

Python 160 60
rasmodel rasmodel Public

RAS Executable Model (REM)

Python 4 9
CancerBrowser CancerBrowser Public

HMS LINCS Cancer Browser

JavaScript 5 3

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Showing 10 of 55 repositories

indra Public
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

Python 160 BSD-2-Clause 60 36 6 Updated Apr 11, 2024
bioagents Public
Biological reasoning agents

Python 4 BSD-2-Clause 15 7 2 Updated Apr 3, 2024
OMERO.forms Public
Extension to OMERO.web to enhance metadata input and provide provenance

Python 7 AGPL-3.0 4 4 3 Updated Dec 5, 2023
famplex Public Forked from johnbachman/famplex
Resources for grounding protein families and complexes from text and describing their hierarchical relationships.

Python 18 CC0-1.0 30 28 2 Updated Sep 10, 2023
indra_assembly_paper Public
Automated assembly of molecular mechanisms at scale from text mining and curated databases

Jupyter Notebook 0 1 0 1 Updated Jan 23, 2023
pathwaymap.indra.bio Public
pathwaymap.indra.bio website

JavaScript 2 BSD-2-Clause 1 0 7 Updated May 25, 2022
indra_apps Public

Jupyter Notebook 1 8 0 0 Updated Apr 26, 2021
earm Public Forked from clopezx/earm
Extrinsic Apoptosis Reaction Model

Python 1 17 3 1 Updated Oct 28, 2020
indra_pathway_map Public Forked from pvtodorov/indra_pathway_map

JavaScript 0 BSD-2-Clause 5 0 0 Updated Jun 17, 2020
cycif Public
Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

MATLAB 9 MIT 4 0 0 Updated May 5, 2019

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