Rest fmri no-linear Analysis tool

Based on:

• Pipelines: nipype -Preprocessed: fsl, ants, nipy and custom
• Functional Brain Atlas: CanICA and DictLearn nilearn
• Region Extraction: nilearn
• Non-lineal analysis: ad-hoc developed functions and and nitime

Preprocess pipeline

nipype, fsl, ants, nipy, custom

Brain Atlas computation

nilearn: CanICA & Dictlearn; FastIca based

Information theory based analysis

IN PROGRESS

PSD calculation

nitime

SSE calculation

ad-hoc

Permutation Entropy

ad-hoc

Plot and save results

matplotlib, nilearn and numpy

Plot PSD for each subject's extracted region

Plot SSE for each subject's extracted region

Getting started

READY

Dependencies and versions

• python 3.6
• numpy
• nipype
• nilearn
• nitime
• matplotlib
• nibabel

Configuration file

READY

Inputs

READY Directory structure pattern

• Root
• Data dir
• Outputs dir

Outputs

READY

Execution examples

READY