Botrytis smallRNA profiling

Re-processing public smRNA data from Botrytis cinerea

Using fastp to trim adapytors, STAR to align, and some custom python to count read lengths and sequences

Name		Name	Last commit message	Last commit date
Latest commit History 67 Commits
TE		TE
genomes/botrytis		genomes/botrytis
lib		lib
pipeline		pipeline
plots		plots
results		results
scripts		scripts
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
JinLab_Botrytis_sRNA.Rproj		JinLab_Botrytis_sRNA.Rproj
LICENSE		LICENSE
README.md		README.md
arne.tsv		arne.tsv
botrytis_sra_metadata.csv		botrytis_sra_metadata.csv
do-rstudio.sh		do-rstudio.sh
make_featurefile.sh		make_featurefile.sh
manifest.tsv		manifest.tsv
samples.csv		samples.csv
samples_metadata.csv		samples_metadata.csv
sra2name.tsv		sra2name.tsv

stajichlab/Botrytis_sRNA_profile