Skip to content

stanfordhpccenter/soleil-x

BranchesTags

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

1,170 Commits

scripts

scripts

 
 

src

src

 
 

testcases

testcases

 
 

.gitignore

.gitignore

 
 

LICENSE

LICENSE

 
 

README.md

README.md

 
 

Repository files navigation

Setup (generic)

See below for instructions targeting specific systems.

Prerequisites

  • Legion (latest version -- Soleil-X follows the developments in Legion)
  • GCC 4.9+ (we need a working std::regex library)
  • CUDA 7.5+
  • Python 2.X

The following are automatically installed during Legion installation:

  • LLVM 3.8 (for CUDA 8.0+) or 3.5 (for CUDA 7.5, and better debug info)
  • GASNET (custom Legion-specific version)
  • Terra (custom Legion-specific version)
  • HDF5 (any recent version)

Add to shell startup

Normally you'd need to edit file ~/.bashrc. Replace the ??? depending on your system.

# Module loads (if necessary)
...
# Build config (if necessary, for Legion or Soleil-X)
...
# Path setup (mandatory)
export LEGION_DIR=???
export HDF_ROOT="$LEGION_DIR"/language/hdf/install
export SOLEIL_DIR=???
[export SCRATCH=???]
# CUDA config (if using CUDA code generation)
export CUDA_HOME=???
export CUDA="$CUDA_HOME"
export GPU_ARCH=???

Download software

git clone https://gitlab.com/StanfordLegion/legion.git "$LEGION_DIR"
git clone https://github.com/stanfordhpccenter/soleil-x.git "$SOLEIL_DIR"

Install Legion

Replace the ? depending on your system's capabilities.

cd "$LEGION_DIR"/language
USE_CUDA=? USE_OPENMP=? USE_GASNET=? USE_HDF=? scripts/setup_env.py --llvm-version 38

See Elliott's instructions for more help.

Compile Soleil-X

cd "$SOLEIL_DIR"/src
[USE_CUDA=0] [USE_HDF=0] make

Running

cd "$SOLEIL_DIR"/src
./soleil.sh ...

The src/soleil.sh script accepts some options through the environment (see the top of that file for details), and forwards all command-line arguments to the Soleil-X executable and the Legion runtime (each will ignore options it doesn't recognize).

Currently, Soleil-X reads the following options:

  • -i <config>.json: Provide a case configuration file, to be run as an additional sample. See src/config_schema.lua for documentation on the available options (Config struct).
  • -m <multi-config>.json: Provide a two-case configuration file, to be run as two connected samples. See src/config_schema.lua for documentation on the available options (MultiConfig struct).
  • -o <out_dir>: Specify an output directory for the executable (if not defined, we use a new directory under $SCRATCH if that is defined, otherwise we use the current directory).

Setup (local Ubuntu machine w/o GPU)

Add to shell startup

# Build config
export CC=gcc
export CXX=g++
# Path setup
export LEGION_DIR=???
export HDF_ROOT="$LEGION_DIR"/language/hdf/install
export SOLEIL_DIR=???

Download software

git clone https://gitlab.com/StanfordLegion/legion.git "$LEGION_DIR"
git clone https://github.com/stanfordhpccenter/soleil-x.git "$SOLEIL_DIR"

Install Legion

cd "$LEGION_DIR"/language
USE_CUDA=0 USE_OPENMP=1 USE_GASNET=0 USE_HDF=1 scripts/setup_env.py --llvm-version 38

Compile Soleil-X

cd "$SOLEIL_DIR"/src
make

Setup (Sapling @ Stanford)

See Elliott's guide for general guidance on using sapling.

Add to shell startup

# Module loads
module load slurm/20.11.4
# Build config
export CONDUIT=ibv
export CC=gcc
export CXX=g++
# Path setup
export LEGION_DIR=???
export HDF_ROOT="$LEGION_DIR"/language/hdf/install
export SOLEIL_DIR=???
# CUDA config
export CUDA_HOME=/usr/local/cuda-11.1
export CUDA="$CUDA_HOME"
export GPU_ARCH=pascal

Download software

git clone https://gitlab.com/StanfordLegion/legion.git "$LEGION_DIR"
git clone https://github.com/stanfordhpccenter/soleil-x.git "$SOLEIL_DIR"

Install Legion

We can't build Legion on the head node, because it has a different architecture than the compute nodes. Currently we have to manually reload modules when moving to a compute node, because the version installed on the head node is incompatible with that on the compute nodes.

cd "$LEGION_DIR"/language
USE_CUDA=1 USE_OPENMP=1 USE_GASNET=1 USE_HDF=1 srun --exclusive -N 1 -p gpu bash -c '. "$SOLEIL_DIR"/src/sapling_reload_modules.sh; scripts/setup_env.py --llvm-version 60'

Compile Soleil-X

Similarly, we build Soleil on a compute node.

cd "$SOLEIL_DIR"/src
srun --exclusive -N 1 -p gpu bash -c '. "$SOLEIL_DIR"/src/sapling_reload_modules.sh; make'

Setup (Certainty @ Stanford)

Certainty no longer has a GPU queue.

Add to shell startup

# Module loads
module load gnu7/7.2.0
module load cuda/8.0
module load openmpi3/3.0.0
# Build config
export CONDUIT=ibv
export CC=gcc
export CXX=g++
# Path setup
export LEGION_DIR=???
export HDF_ROOT="$LEGION_DIR"/language/hdf/install
export SOLEIL_DIR=???
# CUDA config
export CUDA_HOME=/usr/local/cuda-8.0
export CUDA="$CUDA_HOME"
export GPU_ARCH=fermi

Download software

git clone https://gitlab.com/StanfordLegion/legion.git "$LEGION_DIR"
git clone https://github.com/stanfordhpccenter/soleil-x.git "$SOLEIL_DIR"

Install Legion

# Disable PMI in GASnet, because the PMI library is missing on Certainty.
git clone https://github.com/StanfordLegion/gasnet.git $LEGION_DIR/language/gasnet
cd "$LEGION_DIR"/language/gasnet
sed -i 's|$(GASNET_VERSION)/configure --prefix=|$(GASNET_VERSION)/configure --disable-pmi --prefix=|g' Makefile
make
# Rest of compilation as normal
cd "$LEGION_DIR"/language
USE_CUDA=0 USE_OPENMP=1 USE_GASNET=1 USE_HDF=1 scripts/setup_env.py --llvm-version 38

Compile Soleil-X

cd "$SOLEIL_DIR"/src
USE_CUDA=0 make

Setup (Titan @ ORNL)

Add to shell startup

Install Legion and Soleil-X on the /ccs/proj filesystem, not your home directory (home directories are not mounted on the compute nodes).

We set MARCH, the processor architecture that Legion will be built for, to one that is compatible with both the login node and the compute nodes. This is done so that libregent.so can be used by both the final executable, when it's executing on a compute node, and the Regent compiler, which needs to link against it while compiling Soleil-X on the login node.

# Module loads
module load python/2.7.9
module load cudatoolkit/9.1.85_3.10-1.0502.df1cc54.3.1
module swap PrgEnv-pgi PrgEnv-gnu
# Build config
export MARCH=barcelona
export CC=cc
export CXX=CC
export HOST_CC=gcc
export HOST_CXX=g++
# Path setup
export LEGION_DIR=???
export HDF_ROOT="$LEGION_DIR"/language/hdf/install
export SOLEIL_DIR=???
export SCRATCH="$PROJWORK"/csc188/stanford
# CUDA config
export CUDA_HOME=/opt/nvidia/cudatoolkit9.1/9.1.85_3.10-1.0502.df1cc54.3.1
export CUDA="$CUDA_HOME"
export GPU_ARCH=kepler

Download software

git clone https://gitlab.com/StanfordLegion/legion.git "$LEGION_DIR"
git clone https://github.com/stanfordhpccenter/soleil-x.git "$SOLEIL_DIR"

Install Legion

cd "$LEGION_DIR"/language
USE_CUDA=1 USE_OPENMP=1 USE_GASNET=1 USE_HDF=1 scripts/setup_env.py --llvm-version 38

Compile Soleil-X

cd "$SOLEIL_DIR"/src
make

Setup (Summit @ ORNL)

Add to shell startup

Install Legion and Soleil-X on the /ccs/proj filesystem, not your home directory (home directories are not mounted on the compute nodes).

# Module loads
module load gcc/6.4.0
module load cuda/9.0.184
# Build config
export CC=gcc
export CXX=g++
export CONDUIT=ibv
# Path setup
export LEGION_DIR=???
export HDF_ROOT="$LEGION_DIR"/language/hdf/install
export SOLEIL_DIR=???
export SCRATCH=/gpfs/alpine/proj-shared/csc335/stanford
# CUDA config
export CUDA_HOME=/sw/summit/cuda/9.0.184
export CUDA="$CUDA_HOME"
export GPU_ARCH=volta

Download software

git clone https://gitlab.com/StanfordLegion/legion.git "$LEGION_DIR"
git clone https://github.com/stanfordhpccenter/soleil-x.git "$SOLEIL_DIR"

Install Legion

The system restricts the amount of memory we can use on a login node, so we need to build on a compute node.

cd "$LEGION_DIR"/language
CC_FLAGS='-DMAX_NUM_NODES=4096' USE_CUDA=1 USE_OPENMP=1 USE_GASNET=1 USE_HDF=1 bsub -W 60 -nnodes 1 -P CSC335 -I scripts/setup_env.py --llvm-version 60

Compile Soleil-X

cd "$SOLEIL_DIR"/src
make

Setup (PizDaint @ ETH)

Add to shell startup

# Module loads
module swap PrgEnv-cray PrgEnv-gnu
module load daint-gpu
module load cudatoolkit
# Build config
export CC=cc
export CXX=CC
export HOST_CC=gcc
export HOST_CXX=g++
# Path setup
export LEGION_DIR=???
export HDF_ROOT="$LEGION_DIR"/language/hdf/install
export SOLEIL_DIR=???
# CUDA config
export CUDA_HOME="$CUDATOOLKIT_HOME"
export CUDA="$CUDA_HOME"
export GPU_ARCH=pascal

Download software

git clone https://gitlab.com/StanfordLegion/legion.git "$LEGION_DIR"
git clone https://github.com/stanfordhpccenter/soleil-x.git "$SOLEIL_DIR"

Install Legion

cd "$LEGION_DIR"/language
USE_CUDA=1 USE_OPENMP=1 USE_GASNET=1 USE_HDF=1 scripts/setup_env.py --llvm-version 60

Compile Soleil-X

cd "$SOLEIL_DIR"/src
make

Setup (Lassen/Sierra @ LLNL)

Add to shell startup

Install Legion and Soleil-X on the /usr/workspace filesystem; your home directory has a low quota.

# Module loads
module load gcc/7.3.1
module load cuda/10.1.243
# Build config
export CC=gcc
export CXX=g++
export CONDUIT=ibv
# Path setup
export LEGION_DIR=???
export HDF_ROOT="$LEGION_DIR"/language/hdf/install
export SOLEIL_DIR=???
export SCRATCH=/p/gpfs1/`whoami`
# CUDA config
export CUDA_HOME=/usr/tce/packages/cuda/cuda-10.1.243
export CUDA="$CUDA_HOME"
export GPU_ARCH=volta

Download software

git clone https://gitlab.com/StanfordLegion/legion.git "$LEGION_DIR"
git clone https://github.com/stanfordhpccenter/soleil-x.git "$SOLEIL_DIR"

Install Legion

We need to go through the lalloc utility script to build on a compute node.

cd "$LEGION_DIR"/language
CC_FLAGS='-DMAX_NUM_NODES=4096' USE_CUDA=1 USE_OPENMP=1 USE_GASNET=1 USE_HDF=1 lalloc 1 -W 720 scripts/setup_env.py --llvm-version 60

Compile Soleil-X

Soleil-X must similarly be built on a compute node.

cd "$SOLEIL_DIR"/src
lalloc 1 -W 720 make

About

Soleil-X is a turbulence/particle/radiation solver written in the Regent language for execution with the Legion runtime.

Resources

Readme

License

GPL-2.0 license
Activity
Custom properties

Stars

17 stars

Watchers

20 watching

Forks

12 forks
Report repository

Releases

No releases published

Packages

No packages published

Contributors 7

Languages