Change plot color

stephenslab · Jul 10, 2019 · 0a00661 · 0a00661
1 parent 3143ba4
commit 0a00661
Showing 1 changed file with 15 additions and 8 deletions.
diff --git a/manuscript_results/pedagogical_example.ipynb b/manuscript_results/pedagogical_example.ipynb
@@ -81,7 +81,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": null,
    "metadata": {
     "kernel": "R"
    },
@@ -260,8 +260,8 @@
     "susie_label = \"SuSiE fit from IBSS\"\n",
     "pdf('susie_demo.pdf', width =10, height = 5, pointsize=16)\n",
     "par(mfrow=c(1,2), cex.axis = 0.9)\n",
-    "susie_plot(fitted, y='z', b=b, max_cs=1, main = 'Marginal associations', xlab = 'variable (SNP)')\n",
-    "susie_plot(fitted, y='PIP', b=b, max_cs=0.4, main = susie_label, add_legend = F, ylim = c(0,1), xlab = 'variable (SNP)')\n",
+    "susie_plot(fitted, y='z', b=b, max_cs=1, main = 'Marginal associations', xlab = 'variable (SNP)', col = '#767676')\n",
+    "susie_plot(fitted, y='PIP', b=b, max_cs=0.4, main = susie_label, add_legend = F, ylim = c(0,1), xlab = 'variable (SNP)', col = '#767676')\n",
     "dev.off()"
    ]
   },
@@ -1894,24 +1894,31 @@
      "Bash",
      "bash",
      "Bash",
-     "#E6EEFF"
+     "#E6EEFF",
+     ""
     ],
     [
      "R",
      "ir",
      "R",
-     "#DCDCDA"
+     "#DCDCDA",
+     ""
     ],
     [
      "SoS",
      "sos",
      "",
-     ""
+     "",
+     "sos"
     ]
    ],
-   "version": "0.17.1"
+   "panel": {
+    "displayed": true,
+    "height": 0
+   },
+   "version": "0.19.12"
   }
  },
  "nbformat": 4,
- "nbformat_minor": 2
+ "nbformat_minor": 4
 }