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@tgen

Translational Genomics Research Institute

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  1. jetstream jetstream Public

    Workflow management system written as a pure Python package and command-line utility. It supports complex workflows modeled as directed- acyclic graphs (DAGs), and execution on batch schedulers

    Python 16 3

  2. phoenix phoenix Public

    Jetstream compatible workflow template supporting comprehensive analysis of human sequencing data against GRCh38

    EJS 16 6

  3. jetstream_resources jetstream_resources Public

    Collection of scripts and README files tracking the source and generation of reference genomes and annotation files

    Shell 3 1

  4. lumosVar2 lumosVar2 Public

    Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/normal pair, longitudinal samples, primary/met, etc. Can also …

    MATLAB 10 1

Repositories

Showing 10 of 38 repositories
  • containers Public
    Dockerfile 0 0 0 0 Updated May 7, 2024
  • tempe Public

    A container focused and streamlined iteration of the Phoenix pipeline

    Jinja 1 GPL-3.0 1 8 0 Updated Mar 18, 2024
  • snpSniffer Public

    Tool for checking genotype concordance between multiple assays

    Java 0 MIT 2 2 1 Updated Mar 4, 2024
  • jetstream_resources Public

    Collection of scripts and README files tracking the source and generation of reference genomes and annotation files

    Shell 3 MIT 1 4 0 Updated Feb 21, 2024
  • banovichlab Public

    Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).

    R 38 MIT 14 0 0 Updated Feb 9, 2024
  • jetstream Public

    Workflow management system written as a pure Python package and command-line utility. It supports complex workflows modeled as directed- acyclic graphs (DAGs), and execution on batch schedulers

    Python 16 MIT 3 18 (1 issue needs help) 1 Updated Jan 11, 2024
  • vcfMerger2 Public

    Dynamic vcfMerger for 2 to N somatic variants vcf files

    Python 5 1 1 0 Updated Sep 11, 2023
  • Keats_Lab_Public Public

    Public resources from the Keats Lab at TGen

    R 0 GPL-3.0 0 0 0 Updated Aug 23, 2023
  • MMRF_CoMMpass Public

    A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.

    Shell 17 MIT 7 3 0 Updated Apr 17, 2023
  • jetstream_containers Public

    Containers for running TGen Jetstream pipelines

    Python 0 MIT 0 0 0 Updated Feb 21, 2023
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