Decision Intelligence platform for Biological Sequence Searching
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Updated
Oct 10, 2022 - Python
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biological-sequence-analysis
Here are 11 public repositories matching this topic...
Comparative Genomics Toolkit 3
python
data-science
bioinformatics
statistics
genomics
biology
evolution
signal-processing
parallel
markov-chain
phylogenetic-trees
biopython
phylogenetics
molecular-evolution
maximum-likelihood
sequence-alignment
non-stationary
biological-sequence-analysis
pycogent
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May 7, 2024 - Python
Java Utility for Class Hidden Markov Models and Extensions
hmm
protein
semi-supervised-learning
hidden-markov-models
hidden-neural-networks
biological-sequence-analysis
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Updated
Nov 17, 2022 - Java
Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).
bioinformatics
genomics
gene-families
protein-function-prediction
blastx
blastp
biological-sequence-analysis
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May 8, 2024 - Rust
Machine Learning college projects. Project I: Statistical Learning application. Project II: Deep Learning application using CNNs. Final Project: Biological Sequence Analysis using Profile HMM.
college-assignment
machine-learning
machine-learning-algorithms
deep-learning-algorithms
statistical-models
college-project
machine-learning-models
machine-learning-projects
biological-sequence-analysis
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Updated
Jan 11, 2020 - Jupyter Notebook
Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.
python
bioinformatics
programming
genomics
genome
biology
data-analysis
problem-solving
genome-assembly
de-bruijn-graphs
dna-sequences
genomics-visualization
biological-sequence-analysis
sequential-biology
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Updated
Aug 26, 2023 - Python
Bio Python Project using getopt library in python and engaging with the command line prompt.
bioinformatics
getopt
python3
python-programming
error-handling
biopython
cmd
biological-data-analysis
problem-solving
getopt-long
files-analysis
ncbi-database
genebank
command-line-arguments-parser
fasta-files
command-line-interpreter
biological-sequence-analysis
arguments-parsing
input-handling
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Updated
Jan 30, 2023 - Python
Implementing Position Specific Scoring Matrix (PSSM) Algorithm using Python for computational biological tasks.
python
bioinformatics
biology
computational-biology
dna
biological-data-analysis
problem-solving
sequence-analysis
algortihms
biological-sequence-analysis
pssm-matrix
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Updated
Aug 26, 2023 - Python
Data Analysis for Genomics, FASTQ File Structure and Analysis using Python.
visualization
python
bioinformatics
programming
genomics
genome
biology
data-analysis
biological-data-analysis
problem-solving
dna-sequences
fastq-files
biological-sequence-analysis
fastqc-summary
sequential-analyses
quality-scores
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Updated
Aug 26, 2023 - Python
Data Analysis for Genomics, Euler Path for Genome Assembly.
python
bioinformatics
programming
genomics
biology
data-analysis
problem-solving
genome-assembly
de-bruijn-graphs
dna-sequences
euler-path
biological-sequence-analysis
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Updated
Aug 26, 2023 - Python
GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle
python
bioinformatics
snps
genome-analysis
maximum-entropy
sequence-analysis
biological-sequence-analysis
python-bioinformatics
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Updated
May 2, 2024 - Python
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